Mercurial > repos > jjohnson > package_cap3_3
diff tool_dependencies.xml @ 0:8b91ecadabb5 draft default tip
Uploaded
| author | jjohnson |
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| date | Fri, 08 Nov 2013 16:00:56 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Fri Nov 08 16:00:56 2013 -0500 @@ -0,0 +1,77 @@ +<tool_dependency> + <package name="cap3" version="3"> + <install version="1.0"> + <actions_group> + <!-- Download the binaries for CAP3 compatible with 64-bit OSX. --> + <actions os="darwin" architecture="x86_64"> + <action type="download_by_url">http://seq.cs.iastate.edu/CAP3/cap3.macosx.intel64.tar</action> + <action type="move_file"> + <source>cap3</source> + <destination>$INSTALL_DIR</destination> + </action> + <action type="move_file"> + <source>formcon</source> + <destination>$INSTALL_DIR</destination> + </action> + </actions> + <!-- Download the binaries for CAP3 compatible with 32-bit OSX. --> + <actions os="darwin" architecture="i386"> + <action type="download_by_url">http://seq.cs.iastate.edu/CAP3/cap3.macosx.intel32.tar</action> + <action type="move_file"> + <source>cap3</source> + <destination>$INSTALL_DIR</destination> + </action> + <action type="move_file"> + <source>formcon</source> + <destination>$INSTALL_DIR</destination> + </action> + </actions> + <!-- Download the binaries for CAP3 compatible with 64-bit Linux. --> + <actions os="linux" architecture="x86_64"> + <action type="download_by_url">http://seq.cs.iastate.edu/CAP3/cap3.linux.x86_64.tar</action> + <action type="move_file"> + <source>cap3</source> + <destination>$INSTALL_DIR</destination> + </action> + <action type="move_file"> + <source>formcon</source> + <destination>$INSTALL_DIR</destination> + </action> + </actions> + <!-- Download the binaries for CAP3 compatible with 32-bit Linux (i386). --> + <actions os="linux" architecture="i386"> + <action type="download_by_url">http://seq.cs.iastate.edu/CAP3/cap3.linux.tar</action> + <action type="move_file"> + <source>cap3</source> + <destination>$INSTALL_DIR</destination> + </action> + <action type="move_file"> + <source>formcon</source> + <destination>$INSTALL_DIR</destination> + </action> + </actions> + <!-- This actions tag is only processed if none of the above tags resulted in a successful installation. --> + <actions> + <action type="shell_command">echo ERROR: Automated installation on your operating system and CPU architecture combination is not yet supported.</action> + <action type="shell_command">echo Your machine details (the output from 'uname' and 'arch'):</action> + <action type="shell_command">uname</action> + <action type="shell_command">arch</action> + <action type="shell_command">false</action> + <!-- The 'false' command will return an error, so Galaxy should treat this as a failed install --> + </actions> + <action type="set_environment"> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> + </action> + </actions_group> + </install> + <readme> +CAP3: A DNA sequence assembly program. +Huang, X. and Madan, A. (1999) CAP3: A DNA sequence assembly program. Genome Res., 9, 868-877. +http://seq.cs.iastate.edu/ + +LICENCE: +CAP3 and PCAP are available for use at company under a licensing agreement from Michigan Tech. For information on a licensing agreement, please contact Robin Kolehmainen by email at rakolehm@mtu.edu or by phone at 906-487-2228. Michigan Tech handles licensing agreements on PCAP for Iowa State. + + </readme> + </package> +</tool_dependency>