Mercurial > repos > jjohnson > package_cap3_3
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author | jjohnson |
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date | Fri, 08 Nov 2013 16:00:56 -0500 |
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<tool_dependency> <package name="cap3" version="3"> <install version="1.0"> <actions_group> <!-- Download the binaries for CAP3 compatible with 64-bit OSX. --> <actions os="darwin" architecture="x86_64"> <action type="download_by_url">http://seq.cs.iastate.edu/CAP3/cap3.macosx.intel64.tar</action> <action type="move_file"> <source>cap3</source> <destination>$INSTALL_DIR</destination> </action> <action type="move_file"> <source>formcon</source> <destination>$INSTALL_DIR</destination> </action> </actions> <!-- Download the binaries for CAP3 compatible with 32-bit OSX. --> <actions os="darwin" architecture="i386"> <action type="download_by_url">http://seq.cs.iastate.edu/CAP3/cap3.macosx.intel32.tar</action> <action type="move_file"> <source>cap3</source> <destination>$INSTALL_DIR</destination> </action> <action type="move_file"> <source>formcon</source> <destination>$INSTALL_DIR</destination> </action> </actions> <!-- Download the binaries for CAP3 compatible with 64-bit Linux. --> <actions os="linux" architecture="x86_64"> <action type="download_by_url">http://seq.cs.iastate.edu/CAP3/cap3.linux.x86_64.tar</action> <action type="move_file"> <source>cap3</source> <destination>$INSTALL_DIR</destination> </action> <action type="move_file"> <source>formcon</source> <destination>$INSTALL_DIR</destination> </action> </actions> <!-- Download the binaries for CAP3 compatible with 32-bit Linux (i386). --> <actions os="linux" architecture="i386"> <action type="download_by_url">http://seq.cs.iastate.edu/CAP3/cap3.linux.tar</action> <action type="move_file"> <source>cap3</source> <destination>$INSTALL_DIR</destination> </action> <action type="move_file"> <source>formcon</source> <destination>$INSTALL_DIR</destination> </action> </actions> <!-- This actions tag is only processed if none of the above tags resulted in a successful installation. --> <actions> <action type="shell_command">echo ERROR: Automated installation on your operating system and CPU architecture combination is not yet supported.</action> <action type="shell_command">echo Your machine details (the output from 'uname' and 'arch'):</action> <action type="shell_command">uname</action> <action type="shell_command">arch</action> <action type="shell_command">false</action> <!-- The 'false' command will return an error, so Galaxy should treat this as a failed install --> </actions> <action type="set_environment"> <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> </action> </actions_group> </install> <readme> CAP3: A DNA sequence assembly program. Huang, X. and Madan, A. (1999) CAP3: A DNA sequence assembly program. Genome Res., 9, 868-877. http://seq.cs.iastate.edu/ LICENCE: CAP3 and PCAP are available for use at company under a licensing agreement from Michigan Tech. For information on a licensing agreement, please contact Robin Kolehmainen by email at rakolehm@mtu.edu or by phone at 906-487-2228. Michigan Tech handles licensing agreements on PCAP for Iowa State. </readme> </package> </tool_dependency>