# HG changeset patch
# User jjohnson
# Date 1391114071 18000
# Node ID f64a3597da371f08b4567a19e8a7f31d2d97fcb6

Uploaded

diff -r 000000000000 -r f64a3597da37 tool_dependencies.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Thu Jan 30 15:34:31 2014 -0500
@@ -0,0 +1,24 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="shear" version="0.2.7">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">http://vk.cs.umn.edu/SHEAR/downloads/shear-v0.2.7-compiled.tar.gz</action>
+                <action type="move_directory_files">
+                    <source_directory>.</source_directory>
+                    <destination_directory>$INSTALL_DIR</destination_directory>
+                </action>
+                <action type="set_environment">
+                    <environment_variable name="SHEAR_JAR_PATH" action="set_to">$INSTALL_DIR</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+SHEAR: Sample Heterogeneity Estimation and Assembly by Reference
+
+SHEAR is an assembly tool that accounts for heterogeneous variants by estimating their representative percentages and allowing for selective assembly of sample subpopulations. By utilizing structural variant detection algorithms, SHEAR also offers improved performance in the form of a stronger ability to handle difficult structural variant types and improved computational efficiency.
+
+http://vk.cs.umn.edu/SHEAR/
+        </readme>
+    </package>
+</tool_dependency>