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comparison pileup_to_vcf.xml @ 4:fafa105e5f58

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Fix base quality
author Jim Johnson <jj@umn.edu>
date Tue, 19 Mar 2013 13:04:40 -0500
parents d6de2d1f4af9
children 8688e29ba96f
comparison
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3:aa76c8dd97e6 4:fafa105e5f58
1 <tool id="pileup_to_vcf" name="Pileup to VCF" version="2.0"> 1 <tool id="pileup_to_vcf" name="Pileup to VCF" version="2.1">
2 <description>Converts a pileup to VCF with filtering</description> 2 <description>Converts a pileup to VCF with filtering</description>
3 <command interpreter="python">pileup_to_vcf.py -i $input_file -o $output_file 3 <command interpreter="python">pileup_to_vcf.py -i $input_file -o $output_file
4 #if $min_cvrg.__str__ != '': 4 #if $min_cvrg.__str__ != '':
5 --min_coverage $min_cvrg 5 --min_coverage $min_cvrg
6 #end if 6 #end if