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Add option to set VCF ID field value, this can be used to ID germline variants for SnpSift
author Jim Johnson <jj@umn.edu>
date Thu, 11 Apr 2013 10:28:10 -0500
parents 07cd87e94fbe
children
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--- a/README	Thu Mar 28 14:55:50 2013 -0500
+++ b/README	Thu Apr 11 10:28:10 2013 -0500
@@ -2,4 +2,4 @@
 Filters on read coverage, base quality and the frequency of a variant.  
 The VCF info is populated with a SAF tag that give the specific frequency (0 - 1) of a variant being observed.
 This is used for filtering in the mmuff ( Missense Mutation and Frameshift Finder) workflow.
-
+The VCF ID field can be optionally set, which can be used with SnpSift annotate or SnpSift filter.