diff pileup_to_vcf.py @ 7:e77ab15bbce9

Fix VCF header
author Jim Johnson <jj@umn.edu>
date Wed, 20 Mar 2013 07:50:38 -0500
parents d90f56ecd2f9
children c0a6e8f595ec
line wrap: on
line diff
--- a/pileup_to_vcf.py	Wed Mar 20 07:30:20 2013 -0500
+++ b/pileup_to_vcf.py	Wed Mar 20 07:50:38 2013 -0500
@@ -36,9 +36,9 @@
 ##fileformat=VCFv4.0
 ##source=pileup_to_vcf.pyV1.1
 ##INFO=<ID=DP,Number=1,Type=Integer,Description=\"Total Depth\">
-##INFO=<ID=$SAF_header,Number=.,Type=Float,Description=\"Specific Allele Frequency\">
+##INFO=<ID=SAF,Number=.,Type=Float,Description=\"Specific Allele Frequency\">
 ##FILTER=<ID=DP,Description=\"Minimum depth of %s\">
-##FILTER=<ID=$SAF_header,Description=\"Allele frequency of at least %s with base quality minimum %d\">
+##FILTER=<ID=SAF,Description=\"Allele frequency of at least %s with base quality minimum %d\">
 #CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO\
 """