# HG changeset patch
# User Jim Johnson <jj@umn.edu>
# Date 1364500550 18000
# Node ID 07cd87e94fbec9a50c9ddfd24d69c5f0f4fe0ca8
# Parent  e77ab15bbce941f87c7942baa306fbc53e2a23cb
Add REAMDE

diff -r e77ab15bbce9 -r 07cd87e94fbe README
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/README	Thu Mar 28 14:55:50 2013 -0500
@@ -0,0 +1,5 @@
+Cconverts the tabular pileup output from samtools mpileup to a VCF file.  
+Filters on read coverage, base quality and the frequency of a variant.  
+The VCF info is populated with a SAF tag that give the specific frequency (0 - 1) of a variant being observed.
+This is used for filtering in the mmuff ( Missense Mutation and Frameshift Finder) workflow.
+