# HG changeset patch
# User Jim Johnson <jj@umn.edu>
# Date 1363783838 18000
# Node ID e77ab15bbce941f87c7942baa306fbc53e2a23cb
# Parent  d90f56ecd2f9fd49c536dd456bcd3e624de88e1b
Fix VCF header

diff -r d90f56ecd2f9 -r e77ab15bbce9 pileup_to_vcf.py
--- a/pileup_to_vcf.py	Wed Mar 20 07:30:20 2013 -0500
+++ b/pileup_to_vcf.py	Wed Mar 20 07:50:38 2013 -0500
@@ -36,9 +36,9 @@
 ##fileformat=VCFv4.0
 ##source=pileup_to_vcf.pyV1.1
 ##INFO=<ID=DP,Number=1,Type=Integer,Description=\"Total Depth\">
-##INFO=<ID=$SAF_header,Number=.,Type=Float,Description=\"Specific Allele Frequency\">
+##INFO=<ID=SAF,Number=.,Type=Float,Description=\"Specific Allele Frequency\">
 ##FILTER=<ID=DP,Description=\"Minimum depth of %s\">
-##FILTER=<ID=$SAF_header,Description=\"Allele frequency of at least %s with base quality minimum %d\">
+##FILTER=<ID=SAF,Description=\"Allele frequency of at least %s with base quality minimum %d\">
 #CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO\
 """