annotate adjust_seq_orientation.xml @ 0:e5c3175506b7 default tip

Initial tool configs for qiime, most need work.

<tool id="adjust_seq_orientation" name="adjust_seq_orientation" version="1.2.0">
 <description>Get the reverse complement of all sequences</description>
 <requirements>
  <requirement type="binary">adjust_seq_orientation.py</requirement>
 </requirements>
 <command interpreter="python">
  qiime_wrapper.py
  --galaxy_tmpdir='$__new_file_path__'
  adjust_seq_orientation.py
  --input_fasta_fp=$input_fasta_fp
  --output_fp=$output_fp
  $retain_seq_id
 </command>
 <inputs>
  <param name="input_fasta_fp" type="data" format="fasta" label="input_fasta_fp"
   help="path to the input fasta file [REQUIRED]"/>
  <param name="retain_seq_id" type="boolean" truevalue="--retain_seq_id" falsevalue="" checked="false" label="retain_seq_id"
   help="leave seq description lines untouched [default: append ' RC' to seq description lines]"/>
 </inputs>
 <outputs>
  <data format="txt" name="output_fp" label="${tool.name} on ${on_string}: (RC)"/>
 </outputs>
 <tests>
 </tests>
 <help>
  
 </help>
</tool>