annotate make_qiime_py_file.xml @ 0:e5c3175506b7 default tip

Initial tool configs for qiime, most need work.

<tool id="make_qiime_py_file" name="make_qiime_py_file" version="1.2.0">
 <description>Create python file</description>
 <requirements>
  <requirement type="binary">make_qiime_py_file.py</requirement>
 </requirements>
 <command interpreter="python">
  qiime_wrapper.py
  --galaxy_tmpdir='$__new_file_path__'
  make_qiime_py_file.py
  --output_fp=$output_fp
  $script
  $test
  --author_name=$author_name
  --author_email=$author_email
  --copyright=$copyright
 </command>
 <inputs>
  <param name="script" type="boolean" truevalue="--script" falsevalue="" checked="false" label="script"
   help="Pass if creating a script to include option parsing framework [default:False]."/>
  <param name="test" type="boolean" truevalue="--test" falsevalue="" checked="false" label="test"
   help="Pass if creating a unit test file to include relevant information [default:False]."/>
  <param name="author_name" type="text" value="AUTHOR_NAME" label="author_name"
   help="The script author's (probably you) name to be included the header variables. This will typically need to be enclosed  in quotes to handle spaces. [default:AUTHOR_NAME]"/>
  <param name="author_email" type="text" value="AUTHOR_EMAIL" label="author_email"
   help="The script author's (probably you) e-mail address to be included the header variables. [default:AUTHOR_EMAIL]"/>
  <param name="copyright" type="text" value="Copyright 2010, The QIIME project" label="copyright"
   help="The copyright information to be included in the header variables. [default:Copyright 2010, The QIIME project]"/>
 </inputs>
 <outputs>
  <data format="txt" name="output_fp"/>
 </outputs>
 <tests>
 </tests>
 <help>
  
 </help>
</tool>