Mercurial > repos > jjohnson > qiime
annotate sort_denoiser_output.xml @ 0:e5c3175506b7 default tip
Initial tool configs for qiime, most need work.
| author | Jim Johnson <jj@umn.edu> |
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| date | Sun, 17 Jul 2011 10:30:11 -0500 |
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e5c3175506b7
Initial tool configs for qiime, most need work.
Jim Johnson <jj@umn.edu>
parents:
diff
changeset
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1 <tool id="sort_denoiser_output" name="sort_denoiser_output" version="1.2.0"> |
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e5c3175506b7
Initial tool configs for qiime, most need work.
Jim Johnson <jj@umn.edu>
parents:
diff
changeset
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2 <description>Sort denoiser output by cluster size.</description> |
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e5c3175506b7
Initial tool configs for qiime, most need work.
Jim Johnson <jj@umn.edu>
parents:
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3 <requirements> |
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e5c3175506b7
Initial tool configs for qiime, most need work.
Jim Johnson <jj@umn.edu>
parents:
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4 <requirement type="binary">sort_denoiser_output.py</requirement> |
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e5c3175506b7
Initial tool configs for qiime, most need work.
Jim Johnson <jj@umn.edu>
parents:
diff
changeset
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5 </requirements> |
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e5c3175506b7
Initial tool configs for qiime, most need work.
Jim Johnson <jj@umn.edu>
parents:
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6 <command interpreter="python"> |
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e5c3175506b7
Initial tool configs for qiime, most need work.
Jim Johnson <jj@umn.edu>
parents:
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7 qiime_wrapper.py |
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e5c3175506b7
Initial tool configs for qiime, most need work.
Jim Johnson <jj@umn.edu>
parents:
diff
changeset
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8 --galaxy_tmpdir='$__new_file_path__' |
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e5c3175506b7
Initial tool configs for qiime, most need work.
Jim Johnson <jj@umn.edu>
parents:
diff
changeset
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9 sort_denoiser_output.py |
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e5c3175506b7
Initial tool configs for qiime, most need work.
Jim Johnson <jj@umn.edu>
parents:
diff
changeset
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10 --input_fasta_fp=$input_fasta_fp |
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e5c3175506b7
Initial tool configs for qiime, most need work.
Jim Johnson <jj@umn.edu>
parents:
diff
changeset
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11 --output_file=$output_file |
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e5c3175506b7
Initial tool configs for qiime, most need work.
Jim Johnson <jj@umn.edu>
parents:
diff
changeset
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12 </command> |
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e5c3175506b7
Initial tool configs for qiime, most need work.
Jim Johnson <jj@umn.edu>
parents:
diff
changeset
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13 <inputs> |
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e5c3175506b7
Initial tool configs for qiime, most need work.
Jim Johnson <jj@umn.edu>
parents:
diff
changeset
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14 <param name="input_fasta_fp" type="data" format="fasta" label="input_fasta_fp" |
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e5c3175506b7
Initial tool configs for qiime, most need work.
Jim Johnson <jj@umn.edu>
parents:
diff
changeset
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15 help="path to the input fasta file [REQUIRED]"/> |
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e5c3175506b7
Initial tool configs for qiime, most need work.
Jim Johnson <jj@umn.edu>
parents:
diff
changeset
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16 </inputs> |
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e5c3175506b7
Initial tool configs for qiime, most need work.
Jim Johnson <jj@umn.edu>
parents:
diff
changeset
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17 <outputs> |
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e5c3175506b7
Initial tool configs for qiime, most need work.
Jim Johnson <jj@umn.edu>
parents:
diff
changeset
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18 <data format="txt" name="output_file"/> |
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e5c3175506b7
Initial tool configs for qiime, most need work.
Jim Johnson <jj@umn.edu>
parents:
diff
changeset
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19 </outputs> |
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e5c3175506b7
Initial tool configs for qiime, most need work.
Jim Johnson <jj@umn.edu>
parents:
diff
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20 <tests> |
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e5c3175506b7
Initial tool configs for qiime, most need work.
Jim Johnson <jj@umn.edu>
parents:
diff
changeset
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21 </tests> |
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e5c3175506b7
Initial tool configs for qiime, most need work.
Jim Johnson <jj@umn.edu>
parents:
diff
changeset
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22 <help> |
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e5c3175506b7
Initial tool configs for qiime, most need work.
Jim Johnson <jj@umn.edu>
parents:
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23 |
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e5c3175506b7
Initial tool configs for qiime, most need work.
Jim Johnson <jj@umn.edu>
parents:
diff
changeset
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24 </help> |
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Initial tool configs for qiime, most need work.
Jim Johnson <jj@umn.edu>
parents:
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25 </tool> |
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Initial tool configs for qiime, most need work.
Jim Johnson <jj@umn.edu>
parents:
diff
changeset
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