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Initial tool configs for qiime, most need work.
author Jim Johnson <jj@umn.edu>
date Sun, 17 Jul 2011 10:30:11 -0500
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e5c3175506b7 Initial tool configs for qiime, most need work.
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1 <tool id="poller_example" name="poller_example" version="1.2.0">
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2 <description>Create python file</description>
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3 <requirements>
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4 <requirement type="binary">poller_example.py</requirement>
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5 </requirements>
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6 <command interpreter="python">
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7 qiime_wrapper.py
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8 --galaxy_tmpdir='$__new_file_path__'
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9 poller_example.py
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10 --polled_dir=$polled_dir
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11 --poller_fp=$poller_fp
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12 --python_exe_fp=$python_exe_fp
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13 $suppress_custom_functions
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14 </command>
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15 <inputs>
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16 <param name="polled_dir" type="text" label="polled_dir"
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17 help="path to directory to poll [REQUIRED]"/>
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18 <param name="poller_fp" type="data" format="txt" label="poller_fp"
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19 help="full path to qiime/parallel/poller.py [default: /usr/local/lib/python2.6/site-packages/scripts/poller.py]"/>
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20 <param name="python_exe_fp" type="data" format="txt" label="python_exe_fp"
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21 help="full path to python executable [default: python]"/>
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22 <param name="suppress_custom_functions" type="boolean" truevalue="--suppress_custom_functions" falsevalue="" checked="false" label="suppress_custom_functions"
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23 help="use the default functions for checking run completion, processing results, and cleaning up (these are quiet) [default: False]"/>
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24 </inputs>
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25 <outputs>
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26
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27 </outputs>
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28 <tests>
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29 </tests>
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30 <help>
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31
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32 </help>
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33 </tool>
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