comparison make_per_library_sff.xml @ 0:e5c3175506b7 default tip

Initial tool configs for qiime, most need work.

0:e5c3175506b7

<tool id="make_per_library_sff" name="make_per_library_sff" version="1.2.0">
 <description>Make per-library sff files from id lists</description>
 <requirements>
  <requirement type="binary">make_per_library_sff.py</requirement>
 </requirements>
 <command interpreter="python">
  qiime_wrapper.py
  --galaxy_tmpdir='$__new_file_path__'
  make_per_library_sff.py
  --input_sff=$input_sff
  --libdir=$libdir
  --sfffile_path=$sfffile_path
  $use_sfftools
  $debug
 </command>
 <inputs>
  <param name="input_sff" type="text"  label="input_sff"
   help="Input sff file (separate multiple files w/ comma) [REQUIRED]"/>
  <param name="libdir" type="text"  label="libdir"
   help="Directory containing per-library id files [REQUIRED]"/>
  <param name="sfffile_path" type="text"  label="sfffile_path"
   help="Path to sfffile binary [default: use sfffile in $PATH]"/>
  <param name="use_sfftools" type="boolean" truevalue="--use_sfftools" falsevalue="" checked="false" label="use_sfftools"
   help="Use external sfffile program instead of equivalent Python routines."/>
  <param name="debug" type="boolean" truevalue="--debug" falsevalue="" checked="false" label="debug"
   help="Print debugging output to stdout [default: False]"/>
 </inputs>
 <outputs>
  
 </outputs>
 <tests>
 </tests>
 <help>
  
 </help>
</tool>