Mercurial > repos > jjohnson > qiime
comparison trflp_file_to_otu_table.xml @ 0:e5c3175506b7 default tip
Initial tool configs for qiime, most need work.
| author | Jim Johnson <jj@umn.edu> |
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| date | Sun, 17 Jul 2011 10:30:11 -0500 |
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| -1:000000000000 | 0:e5c3175506b7 |
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| 1 <tool id="trflp_file_to_otu_table" name="trflp_file_to_otu_table" version="1.2.0"> | |
| 2 <description>Convert TRFLP text file to an OTU table</description> | |
| 3 <requirements> | |
| 4 <requirement type="binary">trflp_file_to_otu_table.py</requirement> | |
| 5 </requirements> | |
| 6 <command interpreter="python"> | |
| 7 qiime_wrapper.py | |
| 8 --galaxy_tmpdir='$__new_file_path__' | |
| 9 trflp_file_to_otu_table.py | |
| 10 --input_path=$input_path | |
| 11 --output_path=$output_path | |
| 12 </command> | |
| 13 <inputs> | |
| 14 <param name="input_path" type="text" label="input_path" | |
| 15 help="input path: TRFLP text file [REQUIRED]"/> | |
| 16 </inputs> | |
| 17 <outputs> | |
| 18 <data format="txt" name="output_path"/> | |
| 19 </outputs> | |
| 20 <tests> | |
| 21 </tests> | |
| 22 <help> | |
| 23 | |
| 24 </help> | |
| 25 </tool> | |
| 26 |
