comparison make_fastq.xml @ 0:e5c3175506b7 default tip

Initial tool configs for qiime, most need work.

0:e5c3175506b7

<tool id="make_fastq" name="make_fastq" version="1.2.0">
 <description>Make fastq file for ERA submission from paired fasta and qual files</description>
 <requirements>
  <requirement type="binary">make_fastq.py</requirement>
 </requirements>
 <command interpreter="python">
  qiime_wrapper.py
  --galaxy_tmpdir='$__new_file_path__'
  make_fastq.py
  --input_fasta_fp=$input_fasta_fp
  --qual=$qual
  --result_fp=$result_fp
  $split
 </command>
 <inputs>
  <param name="input_fasta_fp" type="data" format="fasta" label="input_fasta_fp"
   help="path to the input fasta file [REQUIRED]"/>
  <param name="qual" type="data" format="qual" label="qual"
   help="names of qual files, comma-delimited [REQUIRED]"/>
  <param name="result_fp" type="data" format="txt" label="result_fp"
   help="Path to store results [default: {input_sequences_filename}.fastq]"/>
  <param name="split" type="boolean" truevalue="--split" falsevalue="" checked="false" label="split"
   help="make separate file for each library [default:False]"/>
 </inputs>
 <outputs>
  
 </outputs>
 <tests>
 </tests>
 <help>
  
 </help>
</tool>