diff make_fastq.xml @ 0:e5c3175506b7 default tip

Initial tool configs for qiime, most need work.

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/make_fastq.xml	Sun Jul 17 10:30:11 2011 -0500
@@ -0,0 +1,34 @@
+<tool id="make_fastq" name="make_fastq" version="1.2.0">
+ <description>Make fastq file for ERA submission from paired fasta and qual files</description>
+ <requirements>
+  <requirement type="binary">make_fastq.py</requirement>
+ </requirements>
+ <command interpreter="python">
+  qiime_wrapper.py
+  --galaxy_tmpdir='$__new_file_path__'
+  make_fastq.py
+  --input_fasta_fp=$input_fasta_fp
+  --qual=$qual
+  --result_fp=$result_fp
+  $split
+ </command>
+ <inputs>
+  <param name="input_fasta_fp" type="data" format="fasta" label="input_fasta_fp"
+   help="path to the input fasta file [REQUIRED]"/>
+  <param name="qual" type="data" format="qual" label="qual"
+   help="names of qual files, comma-delimited [REQUIRED]"/>
+  <param name="result_fp" type="data" format="txt" label="result_fp"
+   help="Path to store results [default: {input_sequences_filename}.fastq]"/>
+  <param name="split" type="boolean" truevalue="--split" falsevalue="" checked="false" label="split"
+   help="make separate file for each library [default:False]"/>
+ </inputs>
+ <outputs>
+  
+ </outputs>
+ <tests>
+ </tests>
+ <help>
+  
+ </help>
+</tool>
+