diff make_library_id_lists.xml @ 0:e5c3175506b7 default tip

Initial tool configs for qiime, most need work.

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/make_library_id_lists.xml	Sun Jul 17 10:30:11 2011 -0500
@@ -0,0 +1,40 @@
+<tool id="make_library_id_lists" name="make_library_id_lists" version="1.2.0">
+ <description>Make library id lists</description>
+ <requirements>
+  <requirement type="binary">make_library_id_lists.py</requirement>
+ </requirements>
+ <command interpreter="python">
+  qiime_wrapper.py
+  --galaxy_tmpdir='$__new_file_path__'
+  make_library_id_lists.py
+  --input_fasta=$input_fasta
+  --screened_rep_seqs=$screened_rep_seqs
+  --otus=$otus
+  --outdir=$outdir
+  --field=$field
+  $debug
+ </command>
+ <inputs>
+  <param name="input_fasta" type="data" format="fasta" label="input_fasta"
+   help="The path to a FASTA file containing input sequences [REQUIRED]"/>
+  <param name="screened_rep_seqs" type="text"  label="screened_rep_seqs"
+   help="The path to a FASTA file containing screened representative seqs[DEFAULT: %default]"/>
+  <param name="otus" type="text"  label="otus"
+   help="The path to an OTU file mapping OTUs onto rep seqs[DEFAULT: %default]"/>
+  <param name="outdir" type="text" value="." label="outdir"
+   help=" The base directory to save results (one file per library)."/>
+  <param name="field" type="integer" value="1" label="field"
+   help="Index of space-delimited field to read id from [DEFAULT: 1]"/>
+  <param name="debug" type="boolean" truevalue="--debug" falsevalue="" checked="false" label="debug"
+   help="Show debug output."/>
+ </inputs>
+ <outputs>
+  
+ </outputs>
+ <tests>
+ </tests>
+ <help>
+  
+ </help>
+</tool>
+