diff submit_to_mgrast.xml @ 0:e5c3175506b7 default tip

Initial tool configs for qiime, most need work.

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/submit_to_mgrast.xml	Sun Jul 17 10:30:11 2011 -0500
@@ -0,0 +1,32 @@
+<tool id="submit_to_mgrast" name="submit_to_mgrast" version="1.2.1">
+ <description>This script submits a FASTA file to MG-RAST</description>
+ <requirements>
+  <requirement type="binary">submit_to_mgrast.py</requirement>
+ </requirements>
+ <command interpreter="python">
+  qiime_wrapper.py
+  --galaxy_tmpdir='$__new_file_path__'
+  submit_to_mgrast.py
+  --input_fasta_fp=$input_fasta_fp
+  --web_key_auth=$web_key_auth
+  --project_id=$project_id
+  --output_dir=$__new_file_path__
+ </command>
+ <inputs>
+  <param name="input_fasta_fp" type="data" format="fasta" label="input_fasta_fp"
+   help="path to the input fasta file [REQUIRED]"/>
+  <param name="web_key_auth" type="text"  label="web_key_auth"
+   help="the web services authorization key from MG-RAST [REQUIRED]"/>
+  <param name="project_id" type="text"  label="project_id"
+   help="the title to be used for the project [REQUIRED]"/>
+ </inputs>
+ <outputs>
+  
+ </outputs>
+ <tests>
+ </tests>
+ <help>
+  
+ </help>
+</tool>
+