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Initial tool configs for qiime, most need work.
author Jim Johnson <jj@umn.edu>
date Sun, 17 Jul 2011 10:30:11 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tree_compare.xml	Sun Jul 17 10:30:11 2011 -0500
@@ -0,0 +1,29 @@
+<tool id="tree_compare" name="tree_compare" version="1.2.0">
+ <description>Compare jackknifed/bootstrapped trees</description>
+ <requirements>
+  <requirement type="binary">tree_compare.py</requirement>
+ </requirements>
+ <command interpreter="python">
+  qiime_wrapper.py
+  --galaxy_tmpdir='$__new_file_path__'
+  tree_compare.py
+  --master_tree=$master_tree
+  --support_dir=$support_dir
+  --output_dir=$__new_file_path__
+ </command>
+ <inputs>
+  <param name="master_tree" type="text"  label="master_tree"
+   help="master tree filepath [REQUIRED]"/>
+  <param name="support_dir" type="text"  label="support_dir"
+   help="path to dir containing support trees [REQUIRED]"/>
+ </inputs>
+ <outputs>
+  
+ </outputs>
+ <tests>
+ </tests>
+ <help>
+  
+ </help>
+</tool>
+