view blast_wrapper.xml @ 0:e5c3175506b7 default tip

Initial tool configs for qiime, most need work.

<tool id="blast_wrapper" name="blast_wrapper" version="1.2.0">
 <description>Blast Interface</description>
 <requirements>
  <requirement type="binary">blast_wrapper.py</requirement>
 </requirements>
 <command interpreter="python">
  qiime_wrapper.py
  --galaxy_tmpdir='$__new_file_path__'
  blast_wrapper.py
  --input_fasta_fp=$input_fasta_fp
  --refseqs_fp=$refseqs_fp
  --num_seqs_per_blast_run=$num_seqs_per_blast_run
 </command>
 <inputs>
  <param name="input_fasta_fp" type="data" format="fasta" label="input_fasta_fp"
   help="path to the input fasta file [REQUIRED]"/>
  <param name="refseqs_fp" type="data" format="fasta" label="refseqs_fp"
   help="path to blast database as a fasta file [REQUIRED]"/>
  <param name="num_seqs_per_blast_run" type="integer" value="1000" label="num_seqs_per_blast_run"
   help="number of sequences passed to each blast call - useful for very large sequence collections [default: 1000]"/>
 </inputs>
 <outputs>
  
 </outputs>
 <tests>
 </tests>
 <help>
  
 </help>
</tool>