view trflp_file_to_otu_table.xml @ 0:e5c3175506b7 default tip

Initial tool configs for qiime, most need work.

<tool id="trflp_file_to_otu_table" name="trflp_file_to_otu_table" version="1.2.0">
 <description>Convert TRFLP text file to an OTU table</description>
 <requirements>
  <requirement type="binary">trflp_file_to_otu_table.py</requirement>
 </requirements>
 <command interpreter="python">
  qiime_wrapper.py
  --galaxy_tmpdir='$__new_file_path__'
  trflp_file_to_otu_table.py
  --input_path=$input_path
  --output_path=$output_path
 </command>
 <inputs>
  <param name="input_path" type="text"  label="input_path"
   help="input path: TRFLP text file [REQUIRED]"/>
 </inputs>
 <outputs>
  <data format="txt" name="output_path"/>
 </outputs>
 <tests>
 </tests>
 <help>
  
 </help>
</tool>