view truncate_fasta_qual_files.xml @ 0:e5c3175506b7 default tip

Initial tool configs for qiime, most need work.

<tool id="truncate_fasta_qual_files" name="truncate_fasta_qual_files" version="1.2.0">
 <description>Generates filtered fasta and quality score files by truncating at the specified base position.</description>
 <requirements>
  <requirement type="binary">truncate_fasta_qual_files.py</requirement>
 </requirements>
 <command interpreter="python">
  qiime_wrapper.py
  --galaxy_tmpdir='$__new_file_path__'
  truncate_fasta_qual_files.py
  --fasta_fp=$fasta_fp
  --qual_fp=$qual_fp
  --base_pos=$base_pos
  --output_dir=$__new_file_path__
 </command>
 <inputs>
  <param name="fasta_fp" type="data" format="fasta" label="fasta_fp"
   help="Fasta file.  Needed to test for congruety between the number of nucleotides in the fasta file and quality scores in the qual file. [REQUIRED]"/>
  <param name="qual_fp" type="data" format="qual" label="qual_fp"
   help="Quality score file used to generate histogram data. [REQUIRED]"/>
  <param name="base_pos" type="text"  label="base_pos"
   help="Nucleotide position to truncate the fasta and quality score files at. [REQUIRED]"/>
 </inputs>
 <outputs>
  
 </outputs>
 <tests>
 </tests>
 <help>
  
 </help>
</tool>