comparison rsem_calculate_expression.xml @ 5:14267d364365 default tip

Update for dataset files_path - use model from BB pull request 532

4:30a8343fb0e7

      #end if
      $input.rsem_sam
    #end if
    ## RSEM reference
    #if $reference.refSrc == 'history':
      ${reference.rsem_ref.dataset.extra_files_path}/${reference.rsem_ref.metadata.reference_name}
    #elif $reference.refSrc == 'cached':
      ${reference.index.fields.path}
    #end if
    ## sample_name: use a hard coded name so we can pull out galaxy outputs
    rsem_output

5:14267d364365

      #end if
      $input.rsem_sam
    #end if
    ## RSEM reference
    #if $reference.refSrc == 'history':
      ${reference.rsem_ref.extra_files_path}/${reference.rsem_ref.metadata.reference_name}
    #elif $reference.refSrc == 'cached':
      ${reference.index.fields.path}
    #end if
    ## sample_name: use a hard coded name so we can pull out galaxy outputs
    rsem_output