Mercurial > repos > jjohnson > rsem
diff rsem_prepare_reference.xml @ 3:59459de65740
mv RSEM datatypes to separate repository, remove samtools dependency
author | Jim Johnson <jj@umn.edu> |
---|---|
date | Mon, 10 Mar 2014 07:19:56 -0500 |
parents | ca988deacfd1 |
children | 30a8343fb0e7 |
line wrap: on
line diff
--- a/rsem_prepare_reference.xml Fri Feb 07 07:34:29 2014 -0600 +++ b/rsem_prepare_reference.xml Mon Mar 10 07:19:56 2014 -0500 @@ -5,6 +5,7 @@ <requirement type="package" version="1.0.0">bowtie</requirement> </requirements> <command> + echo $reference_name " " | tee $reference_file && mkdir $reference_file.extra_files_path && cd $reference_file.extra_files_path && rsem-prepare-reference @@ -31,6 +32,7 @@ $reference.reference_fasta_file #end if $reference_name + > ${reference_name}.log </command> <inputs> <conditional name="reference"> @@ -61,7 +63,7 @@ </help> </param> <param name="reference_name" type="text" value="rsem_ref_name" label="reference name"> - <help>A one work name for this RSEM reference containing only letters, digits, and underscore characters</help> + <help>A one word name for this RSEM reference containing only letters, digits, and underscore characters</help> <validator type="regex" message="Use only letters, digits, and underscore characters">^\w+$</validator> </param> <conditional name="polya">