comparison shear_assemble.xml @ 2:b84716da5595

Update to SHEAR v0.2.9

1:3cbbffb3ae47

<tool id="shear_assemble" name="SHEAR-Assemble" version="0.0.7">
  <description>create a personal genome from sdi</description>
  <requirements>
    <requirement type="package" version="0.2.7">shear</requirement>
  </requirements>
  <!--
  <version_command></version_command>
  -->
  <command interpreter="python">

      <output name="output_fasta"  file="simulated-data.fa"/>
    </test>
  </tests>
  <help>
SHEAR-Assemble takes a reference genome and a *.sdi file from SHEAR-SV to create a new personal genome.
  </help>
</tool>

2:b84716da5595

<tool id="shear_assemble" name="SHEAR-Assemble" version="0.0.9">
  <description>create a personal genome from sdi</description>
  <requirements>
    <requirement type="package" version="0.2.9">shear</requirement>
  </requirements>
  <!--
  <version_command></version_command>
  -->
  <command interpreter="python">

      <output name="output_fasta"  file="simulated-data.fa"/>
    </test>
  </tests>
  <help>
SHEAR-Assemble takes a reference genome and a *.sdi file from SHEAR-SV to create a new personal genome.

Please cite the following article:

Landman SR, Hwang TH, Silverstein KAT, Li Y, Dehm SM, Steinbach M, and Kumar V. SHEAR: sample heterogeneity estimation and assembly by reference. BMC Genomics 2014, 15:84.

  </help>
</tool>