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diff shear_sv.xml @ 2:b84716da5595

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Update to SHEAR v0.2.9
author Jim Johnson <jj@umn.edu>
date Sun, 27 Apr 2014 19:57:03 -0500
parents 3cbbffb3ae47
children 7506693aff3b
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--- a/shear_sv.xml	Thu Jan 30 15:53:55 2014 -0600
+++ b/shear_sv.xml	Sun Apr 27 19:57:03 2014 -0500
@@ -1,8 +1,8 @@
 <?xml version="1.0"?>
-<tool id="shear_sv" name="SHEAR-SV" version="0.0.7">
+<tool id="shear_sv" name="SHEAR-SV" version="0.0.9">
   <description>find SVs and estimate the heterogeneity levels from a BAM</description>
   <requirements>
-    <requirement type="package" version="0.2.7">shear</requirement>
+    <requirement type="package" version="0.2.9">shear</requirement>
     <requirement type="package" version="0.1.19">samtools</requirement>
     <requirement type="package" version="0.6.2">bwa</requirement>
     <requirement type="package" version="1.0.1">crest</requirement>
@@ -132,5 +132,10 @@
 heterogeneity level of those SVs. It will output a *.report file reporing the
 SVs and their heterogeneity levels, and it will output a *.sdi file that can be
 used for SHEAR-Assemble to reconstruct the new genome.
+
+Please cite the following article:
+
+Landman SR, Hwang TH, Silverstein KAT, Li Y, Dehm SM, Steinbach M, and Kumar V. SHEAR: sample heterogeneity estimation and assembly by reference. BMC Genomics 2014, 15:84.
+
   </help>
 </tool>