Mercurial > repos > jjohnson > shear
diff shear_sv.xml @ 2:b84716da5595
Update to SHEAR v0.2.9
author | Jim Johnson <jj@umn.edu> |
---|---|
date | Sun, 27 Apr 2014 19:57:03 -0500 |
parents | 3cbbffb3ae47 |
children | 7506693aff3b |
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--- a/shear_sv.xml Thu Jan 30 15:53:55 2014 -0600 +++ b/shear_sv.xml Sun Apr 27 19:57:03 2014 -0500 @@ -1,8 +1,8 @@ <?xml version="1.0"?> -<tool id="shear_sv" name="SHEAR-SV" version="0.0.7"> +<tool id="shear_sv" name="SHEAR-SV" version="0.0.9"> <description>find SVs and estimate the heterogeneity levels from a BAM</description> <requirements> - <requirement type="package" version="0.2.7">shear</requirement> + <requirement type="package" version="0.2.9">shear</requirement> <requirement type="package" version="0.1.19">samtools</requirement> <requirement type="package" version="0.6.2">bwa</requirement> <requirement type="package" version="1.0.1">crest</requirement> @@ -132,5 +132,10 @@ heterogeneity level of those SVs. It will output a *.report file reporing the SVs and their heterogeneity levels, and it will output a *.sdi file that can be used for SHEAR-Assemble to reconstruct the new genome. + +Please cite the following article: + +Landman SR, Hwang TH, Silverstein KAT, Li Y, Dehm SM, Steinbach M, and Kumar V. SHEAR: sample heterogeneity estimation and assembly by reference. BMC Genomics 2014, 15:84. + </help> </tool>