annotate test-data/interval.bed @ 9:937367efb1da default tip

Change tool dependency to package_snpeff_3_2, now uses environment variable: SNPEFF_JAR_PATH for the location of snpeff jar files.
author Jim Johnson <jj@umn.edu>
date Wed, 18 Sep 2013 10:49:56 -0500
parents 13b6ad2ddace
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
8
13b6ad2ddace SnpEffect v3.2
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1 chr1 1 100000
13b6ad2ddace SnpEffect v3.2
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2 chr1 100000 200000
13b6ad2ddace SnpEffect v3.2
Jim Johnson <jj@umn.edu>
parents:
diff changeset
3 chr1 200000 300000
13b6ad2ddace SnpEffect v3.2
Jim Johnson <jj@umn.edu>
parents:
diff changeset
4 chr1 300000 400000
13b6ad2ddace SnpEffect v3.2
Jim Johnson <jj@umn.edu>
parents:
diff changeset
5 chr1 400000 500000
13b6ad2ddace SnpEffect v3.2
Jim Johnson <jj@umn.edu>
parents:
diff changeset
6 chr1 500000 600000
13b6ad2ddace SnpEffect v3.2
Jim Johnson <jj@umn.edu>
parents:
diff changeset
7 chr1 600000 700000
13b6ad2ddace SnpEffect v3.2
Jim Johnson <jj@umn.edu>
parents:
diff changeset
8 chr1 700000 800000
13b6ad2ddace SnpEffect v3.2
Jim Johnson <jj@umn.edu>
parents:
diff changeset
9 chr1 800000 900000
13b6ad2ddace SnpEffect v3.2
Jim Johnson <jj@umn.edu>
parents:
diff changeset
10 chr1 900000 1000000