annotate tool-data/snpeffect_regulationdb.loc.sample @ 9:937367efb1da default tip

Change tool dependency to package_snpeff_3_2, now uses environment variable: SNPEFF_JAR_PATH for the location of snpeff jar files.
author Jim Johnson <jj@umn.edu>
date Wed, 18 Sep 2013 10:49:56 -0500
parents 13b6ad2ddace
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13b6ad2ddace SnpEffect v3.2
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1 ## Databases for SnpEff
13b6ad2ddace SnpEffect v3.2
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2 ## These are from the list on: http://snpeff.sourceforge.net/download.html
13b6ad2ddace SnpEffect v3.2
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3 ## the Description field in this sample is "Genome : Version"
13b6ad2ddace SnpEffect v3.2
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4 #Genome Regulation_Name
13b6ad2ddace SnpEffect v3.2
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5 GRCh37.70 CD4
13b6ad2ddace SnpEffect v3.2
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6 GRCh37.70 GM06990
13b6ad2ddace SnpEffect v3.2
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7 GRCh37.70 GM12878
13b6ad2ddace SnpEffect v3.2
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8 GRCh37.70 H1ESC
13b6ad2ddace SnpEffect v3.2
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9 GRCh37.70 HMEC
13b6ad2ddace SnpEffect v3.2
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10 GRCh37.70 HSMM
13b6ad2ddace SnpEffect v3.2
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11 GRCh37.70 HUVEC
13b6ad2ddace SnpEffect v3.2
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12 GRCh37.70 HeLa-S3
13b6ad2ddace SnpEffect v3.2
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13 GRCh37.70 HepG2
13b6ad2ddace SnpEffect v3.2
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14 GRCh37.70 IMR90
13b6ad2ddace SnpEffect v3.2
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15 GRCh37.70 K562
13b6ad2ddace SnpEffect v3.2
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16 GRCh37.70 K562b
13b6ad2ddace SnpEffect v3.2
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17 GRCh37.70 NH-A
13b6ad2ddace SnpEffect v3.2
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18 GRCh37.70 NHEK
13b6ad2ddace SnpEffect v3.2
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19