changeset | 937367efb1da |
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branch | default |
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tag | tip |
user | Jim Johnson <jj@umn.edu> |
description | Change tool dependency to package_snpeff_3_2, now uses environment variable: SNPEFF_JAR_PATH for the location of snpeff jar files. |
files | snpEff.xml snpEff_download.xml snpSift_annotate.xml snpSift_caseControl.xml snpSift_filter.xml snpSift_int.xml tool_dependencies.xml |
changeset | 13b6ad2ddace |
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user | Jim Johnson <jj@umn.edu> |
description | SnpEffect v3.2 |
files | snpEff.xml snpEff_download.xml snpSift_annotate.xml snpSift_caseControl.xml snpSift_filter.xml snpSift_int.xml test-data/interval.bed tool-data/snpeffect_regulationdb.loc.sample tool_dependencies.xml |
changeset | b26a1aff7f81 |
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user | Jim Johnson <jj@umn.edu> |
description | Fix issues with snpEff commandline template and add test cases |
files | snpEff.xml test-data/vcf_homhet.vcf |
changeset | ec16dae84230 |
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user | Jim Johnson <jj@umn.edu> |
description | Fix tests for SnpSift caseControl and intervals |
files | snpSift_caseControl.xml snpSift_int.xml |
changeset | 192a236898f5 |
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user | Jim Johnson <jj@umn.edu> |
description | Add test cases for SnpSift |
files | snpSift_annotate.xml snpSift_caseControl.xml snpSift_filter.xml snpSift_int.xml test-data/annotate_1.vcf test-data/annotate_5.vcf test-data/db_test_1.vcf test-data/test.private.01.vcf test-data/test.private.02.vcf test-data/test01.vcf |
changeset | fe23d90249ee |
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user | Jim Johnson <jj@umn.edu> |
description | Remove help error copied wiki: and is single ampersand |
files | snpSift_filter.xml |
changeset | 3b0c657b852b |
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user | Jim Johnson <jj@umn.edu> |
description | Fix command in snpEff.xml |
files | snpEff.xml |
changeset | a9bae7957c36 |
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user | Jim Johnson <jj@umn.edu> |
description | Fix typo on caseControl in commandline |
files | snpSift_caseControl.xml |
changeset | 2c595fea585c |
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user | Jim Johnson <jj@umn.edu> |
description | Add more doocumentation |
files | snpSift_caseControl.xml snpSift_filter.xml |
changeset | c07c403fc470 |
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tag | |
user | jjohnson |
description | Uploaded |
files | README snpEff.xml snpEff_download.xml snpSift_annotate.xml snpSift_caseControl.xml snpSift_filter.xml snpSift_int.xml tool-data/snpeffect_genomedb.loc.sample tool_dependencies.xml |