comparison tool_dependencies.xml @ 8:13b6ad2ddace

SnpEffect v3.2

7:b26a1aff7f81

<?xml version="1.0"?>
<tool_dependency>
    <package name="snpEff" version="3.1">
        <install version="1.0">
            <actions>
                <action type="download_by_url">http://sourceforge.net/projects/snpeff/files/snpEff_v3_1_core.zip</action>
                <action type="move_directory_files">
                    <source_directory>.</source_directory>
                    <destination_directory>$INSTALL_DIR</destination_directory>
                </action>
                <action type="set_environment">
                    <environment_variable name="JAVA_JAR_PATH" action="set_to">$INSTALL_DIR</environment_variable>
                </action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/scripts</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
        </readme>
    </package>
</tool_dependency>

8:13b6ad2ddace

<?xml version="1.0"?>
<tool_dependency>
    <package name="snpEff" version="3.2">
        <repository toolshed="http://toolshed.g2.bx.psu.edu" name="snpeff_3_2" owner="jjohnson" changeset_revision="8ece49cfe180" />
    </package>
</tool_dependency>