comparison snpSift_int.xml @ 5:192a236898f5

Add test cases for SnpSift

4:fe23d90249ee

	</outputs>
        <stdio>
          <exit_code range=":-1"  level="fatal"   description="Error: Cannot open file" />
          <exit_code range="1:"  level="fatal"   description="Error" />
        </stdio>
	<help>

You can filter using intervals (BED file)

For details about this tool, please go to http://snpeff.sourceforge.net/SnpSift.html#intervals

5:192a236898f5

	</outputs>
        <stdio>
          <exit_code range=":-1"  level="fatal"   description="Error: Cannot open file" />
          <exit_code range="1:"  level="fatal"   description="Error" />
        </stdio>
        <tests>
            <test>
                <param name="input" ftype="vcf" value="annotate_5.vcf"/>
                <param name="bed" ftype="bed" value="interval.bed"/>
                <output name="output">
                    <assert_contents>
                        <has_text text="872687" />
                        <not_has_text text="1195966" />
                    </assert_contents>
                </output>
            </test>

        </tests>

	<help>

You can filter using intervals (BED file)

For details about this tool, please go to http://snpeff.sourceforge.net/SnpSift.html#intervals