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comparison snpSift_caseControl.xml @ 2:a9bae7957c36

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Fix typo on caseControl in commandline
author Jim Johnson <jj@umn.edu>
date Wed, 30 Jan 2013 17:29:10 -0600
parents 2c595fea585c
children 192a236898f5
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1:2c595fea585c 2:a9bae7957c36
6 --> 6 -->
7 <requirements> 7 <requirements>
8 <requirement type="package" version="3.1">snpEff</requirement> 8 <requirement type="package" version="3.1">snpEff</requirement>
9 </requirements> 9 </requirements>
10 <command> 10 <command>
11 java -Xmx1G -jar \$JAVA_JAR_PATH/SnpSift.jar casControl -q $hhCase $hhControl '$caseControStr' $input > $output 11 java -Xmx1G -jar \$JAVA_JAR_PATH/SnpSift.jar caseControl -q $hhCase $hhControl '$caseControStr' $input > $output
12 </command> 12 </command>
13 <inputs> 13 <inputs>
14 <param format="vcf" name="input" type="data" label="VCF input"/> 14 <param format="vcf" name="input" type="data" label="VCF input"/>
15 <param name="hhCase" type="select" label="Hom/Het case"> 15 <param name="hhCase" type="select" label="Hom/Het case">
16 <option value="any">Any</option> 16 <option value="any">Any</option>