Mercurial > repos > jjohnson > snpeff
comparison snpSift_caseControl.xml @ 6:ec16dae84230
Fix tests for SnpSift caseControl and intervals
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Tue, 26 Mar 2013 15:24:30 -0500 |
| parents | 192a236898f5 |
| children | 13b6ad2ddace |
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| 5:192a236898f5 | 6:ec16dae84230 |
|---|---|
| 43 <param name="hhCase" value="any"/> | 43 <param name="hhCase" value="any"/> |
| 44 <param name="hhControl" value="any"/> | 44 <param name="hhControl" value="any"/> |
| 45 <param name="caseControStr" value="--"/> | 45 <param name="caseControStr" value="--"/> |
| 46 <output name="output"> | 46 <output name="output"> |
| 47 <assert_contents> | 47 <assert_contents> |
| 48 <has_text text="Cases=0,0,0;" /> | 48 <has_text text="CaseControl=0/0,0/2;" /> |
| 49 <has_text text="Controls=0,0,0;" /> | |
| 50 </assert_contents> | 49 </assert_contents> |
| 51 </output> | 50 </output> |
| 52 </test> | 51 </test> |
| 53 | 52 |
| 54 <test> | 53 <test> |
| 56 <param name="hhCase" value="any"/> | 55 <param name="hhCase" value="any"/> |
| 57 <param name="hhControl" value="any"/> | 56 <param name="hhControl" value="any"/> |
| 58 <param name="caseControStr" value="--"/> | 57 <param name="caseControStr" value="--"/> |
| 59 <output name="output"> | 58 <output name="output"> |
| 60 <assert_contents> | 59 <assert_contents> |
| 61 <has_text text="Cases=0,0,0;" /> | 60 <has_text text="CaseControl=0/0,2/0;" /> |
| 62 <has_text text="Controls=2,0,4;" /> | |
| 63 </assert_contents> | 61 </assert_contents> |
| 64 </output> | 62 </output> |
| 65 </test> | 63 </test> |
| 66 | 64 |
| 67 <test> | 65 <test> |
| 69 <param name="hhCase" value="any"/> | 67 <param name="hhCase" value="any"/> |
| 70 <param name="hhControl" value="any"/> | 68 <param name="hhControl" value="any"/> |
| 71 <param name="caseControStr" value="-+"/> | 69 <param name="caseControStr" value="-+"/> |
| 72 <output name="output"> | 70 <output name="output"> |
| 73 <assert_contents> | 71 <assert_contents> |
| 74 <has_text text="Cases=1,0,2;" /> | 72 <has_text text="CaseControl=1/0,1/0;" /> |
| 75 <has_text text="Controls=1,0,2;" /> | |
| 76 </assert_contents> | 73 </assert_contents> |
| 77 </output> | 74 </output> |
| 78 </test> | 75 </test> |
| 79 | 76 |
| 80 </tests> | 77 </tests> |