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diff snpSift_annotate.xml @ 5:192a236898f5

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Add test cases for SnpSift
author Jim Johnson <jj@umn.edu>
date Mon, 25 Mar 2013 08:51:33 -0500
parents c07c403fc470
children 13b6ad2ddace
line wrap: on
line diff
--- a/snpSift_annotate.xml	Wed Mar 20 13:19:14 2013 -0500
+++ b/snpSift_annotate.xml	Mon Mar 25 08:51:33 2013 -0500
@@ -20,7 +20,17 @@
 	<outputs>
 		<data format="vcf" name="output" />
 	</outputs>
-
+	<tests>
+	    <test>
+                <param name="input" ftype="vcf" value="annotate_1.vcf"/>
+                <param name="dbSnp" ftype="vcf" value="db_test_1.vcf"/>
+                <output name="output">
+                    <assert_contents>
+                        <has_text text="rs76166080" />
+                    </assert_contents>
+                </output>
+	    </test>
+	</tests>
 	<help>
 
 This is typically used to annotate IDs from dbSnp.