Mercurial > repos > jjohnson > snpeff

view tool_dependencies.xml @ 3:3b0c657b852b

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Fix command in snpEff.xml
author Jim Johnson <jj@umn.edu>
date Wed, 06 Feb 2013 07:05:27 -0600
parents c07c403fc470
children 192a236898f5
line wrap: on
line source

<?xml version="1.0"?>
<tool_dependency>
    <package name="snpEff" version="3.1">
        <install version="1.0">
            <actions>
                <action type="download_by_url">http://sourceforge.net/projects/snpeff/files/snpEff_v3_1_core.zip</action>
                <action type="move_directory_files">
                    <source_directory>.</source_directory>
                    <destination_directory>$INSTALL_DIR</destination_directory>
                </action>
                <action type="set_environment">
                    <environment_variable name="JAVA_JAR_PATH" action="set_to">$INSTALL_DIR</environment_variable>
                </action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/scripts</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
        </readme>
    </package>
</tool_dependency>