# HG changeset patch
# User Jim Johnson <jj@umn.edu>
# Date 1359588550 21600
# Node ID a9bae7957c361e767f9c57146e16cd9e5d15ff46
# Parent  2c595fea585c1e1dfa6e1914b2470646285b3159
Fix typo on caseControl in commandline

diff -r 2c595fea585c -r a9bae7957c36 snpSift_caseControl.xml
--- a/snpSift_caseControl.xml	Wed Jan 30 16:20:32 2013 -0600
+++ b/snpSift_caseControl.xml	Wed Jan 30 17:29:10 2013 -0600
@@ -8,7 +8,7 @@
                 <requirement type="package" version="3.1">snpEff</requirement>
 	</requirements>
 	<command>
-		java -Xmx1G -jar \$JAVA_JAR_PATH/SnpSift.jar casControl -q $hhCase $hhControl '$caseControStr' $input > $output
+		java -Xmx1G -jar \$JAVA_JAR_PATH/SnpSift.jar caseControl -q $hhCase $hhControl '$caseControStr' $input > $output
 	</command>
 	<inputs>
 		<param format="vcf" name="input" type="data" label="VCF input"/>