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annotate README @ 5:85b933b7d231

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Make the reporting of the SnpEff Amino_Acid_change field an option
author Jim Johnson <jj@umn.edu>
date Fri, 24 May 2013 08:50:03 -0500
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1 snpeff_cds_report reports the protein coding changes that result from frame shift and non_synonymous variants.
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2 It requires the input to be from the MMuFF (Missense Mutation and Frameshift Finder) workflow.
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3 Specifically it requires the input from snpEff ( http://snpeff.sourceforge.net/ ) set with an Ensembl genome build,
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4 which will annotate variants with Ensembl transctipt IDs.