Mercurial > repos > jjohnson > snpeff_cds_report

view README @ 4:429a6b4df5e5

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Restrict to info items that are key=value pairs
author Jim Johnson <jj@umn.edu>
date Wed, 24 Apr 2013 08:00:04 -0500
parents cdbdac66d6b5
children
line wrap: on
line source

snpeff_cds_report reports the protein coding changes that result from frame shift and non_synonymous variants.  
It requires the input to be from the MMuFF (Missense Mutation and Frameshift Finder) workflow.  
Specifically it requires the input from snpEff ( http://snpeff.sourceforge.net/ ) set with an Ensembl genome build,
which will annotate variants with Ensembl transctipt IDs.