# HG changeset patch
# User Jim Johnson <jj@umn.edu>
# Date 1366808404 18000
# Node ID 429a6b4df5e55d562da8e745229d0d6a5f433553
# Parent  57edf4d0881643009f9b8acb21cf4e8b2f296d39
Restrict to info items that are key=value pairs

diff -r 57edf4d08816 -r 429a6b4df5e5 snpEff_cds_report.py
--- a/snpEff_cds_report.py	Sun Apr 21 14:18:21 2013 -0500
+++ b/snpEff_cds_report.py	Wed Apr 24 08:00:04 2013 -0500
@@ -743,6 +743,8 @@
               print >> sys.stdout, "only simple variant currently supported, ignoring: %s:%s  %s\n" % (chrom,pos,alt)
             for info_item in info.split(';'):
               try:
+                if info_item.find('=') < 0:
+                  continue
                 (key,val) = info_item.split('=',1)  
                 if key == 'SAF':   # Usually a SAF for each variant: if  A,AG   then SAF=0.333333333333333,SAF=0.333333333333333;
                   freqs = info_item.split(',')