Mercurial > repos > jjohnson > snpeff_to_peptides

diff test-data/peptides_10_10.fa @ 0:fcb7188fa0d2

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author jjohnson
date Fri, 07 Feb 2014 15:05:20 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/peptides_10_10.fa	Fri Feb 07 15:05:20 2014 -0500
@@ -0,0 +1,12 @@
+>ENSP00000363782 pep:sap chromosome:GRCh37:1:22778472:22853855:1 gene:ENSG00000184677 transcript:ENST00000374651 gene_biotype:protein_coding transcript_biotype:protein_coding snp_location:chr1:22846709 codon_change:Gtg/Atg sap:V885M
+FSAPSMLERHMVTHVGGKPFS
+>ENSP00000346634 pep:sap chromosome:GRCh37:1:36690017:36770958:1 gene:ENSG00000054118 transcript:ENST00000354618 gene_biotype:protein_coding transcript_biotype:protein_coding snp_location:chr1:36752433 codon_change:gCc/gTc sap:A201V
+QAAGDNQGDEVKEQTFSGGTS
+>ENSP00000318415 pep:sap chromosome:GRCh37:1:89445139:89458455:-1 gene:ENSG00000213516 transcript:ENST00000321792 gene_biotype:protein_coding transcript_biotype:protein_coding snp_location:chr1:89449390 codon_change:atA/atG sap:I40M
+KYGRIVEVLLMKDRETNKSRG
+>ENSP00000446099 pep:sap chromosome:GRCh37:1:89445142:89458643:-1 gene:ENSG00000213516 transcript:ENST00000399794 gene_biotype:protein_coding transcript_biotype:protein_coding snp_location:chr1:89449390 codon_change:atA/atG sap:I40M
+KYGRIVEVLLMKDRETNKSRG
+>ENSP00000318415 pep:sap chromosome:GRCh37:1:89445139:89458455:-1 gene:ENSG00000213516 transcript:ENST00000321792 gene_biotype:protein_coding transcript_biotype:protein_coding snp_location:chr1:89449434 codon_change:Aca/Gca sap:T26A
+NTETNEKALEAVFGKYGRIVE
+>ENSP00000446099 pep:sap chromosome:GRCh37:1:89445142:89458643:-1 gene:ENSG00000213516 transcript:ENST00000399794 gene_biotype:protein_coding transcript_biotype:protein_coding snp_location:chr1:89449434 codon_change:Aca/Gca sap:T26A
+NTETNEKALEAVFGKYGRIVE