annotate split_tabular_columns.xml @ 0:d43312f961cc draft default tip

planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/split_tabular_columns commit 1d5750b99b90bb1d2730c816a95849e9b9a7d2f9-dirty

<tool id="split_tabular_columns" name="Split Tabular Columns" version="0.0.1">
    <description>into multiple rows to create a normalized table</description>
    <requirements>
    </requirements>
    <stdio>
        <exit_code range="1:" />
    </stdio>
    <command interpreter="python"><![CDATA[
        #set $delim = str($split_on).replace("'","\'")
        split_tabular_columns.py 
          --input="$input"
          --split_on='${delim}'
          #for $col in str($columns).split(","):
          --column=$col
          #end for
          --output="$output"
    ]]></command>
    <inputs>
        <param name="input" type="data" format="tabular" label="Tabular Dataset to normalize"/>
        <param name="columns" type="data_column" data_ref="input" multiple="True" label="Columns to split"
               help=""/>
        <param name="split_on" type="text" value="," label="List delimiter in column">
            <sanitizer sanitize="False"/>
            <validator type="regex" message="Anything but TAB or Newline">^[^\t\n\r\f\v]+$</validator>
        </param>
    </inputs>
    <outputs>
        <data format="tabular" name="output" label="${input.name} normalized"/>
    </outputs>
    <tests>

        <test>
            <param name="input" ftype="tabular" value="input.tabular"/>
            <param name="columns" value="7,8"/>
            <param name="split_on" value="; "/>
            <output name="output" file="output.tabular"/>
        </test>
    </tests>
    <help><![CDATA[
=====================
Split Tabular Columns
=====================

**Inputs**

  Tabular dataset containing one or more columns with a list.  

**Outputs**

  Normalized Tabular dataset containing one or more columns with a list.  


**Example**

  With List delimiter '; ' and split on columns c3 and c4

  the input line:

  ::

    	1	1.3	id1; id2	desc1; desc2	AMDLID

  will be output as 2 lines:

  ::

    	1	1.3	id1	desc1	AMDLID
    	1	1.3	id2	desc2	AMDLID

    ]]></help>
</tool>