diff bamqc_wrapper.pl @ 4:3d690162d629 draft

Added more details for the required dependencies.

--- a/bamqc_wrapper.pl	Tue Feb 12 04:50:47 2013 -0500
+++ b/bamqc_wrapper.pl	Wed Mar 20 09:35:07 2013 +0100
@@ -65,19 +65,6 @@
 mkdir "$tempdir", 077 unless -d "$tempdir";
 INFO "\nTemporary directory:\n$tempdir";
 
-
-# ---------------------- Output files ---------------------------------#
-########################################################################
-# Two possible scenarios
-# - output is written to the file at the output location in config file
-# - output is moved to the output file location
-
-# open (SAMOUTPUT, ">$para{'output_sam'}") 
-# 	or ( ERROR "Could not open output file for writing! (file:$para{'output_sam'}" and die );
-# print SAMOUTPUT "Here comes sam\n";
-# close (SAMOUTPUT);	
-
-
 # -------------------- Assembling command  ----------------------------#
 ########################################################################
 my $outdir="bamqc_output";