Mercurial > repos > john-mccallum > dnaclust
comparison fastaselect.xml @ 3:17a8f8670dc9 draft
Uploaded new fastaselect wrapper
| author | john-mccallum |
|---|---|
| date | Wed, 26 Jun 2013 22:41:45 -0400 |
| parents | 8d31c21e4f28 |
| children |
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| 2:13656c2d7c73 | 3:17a8f8670dc9 |
|---|---|
| 1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
| 2 <tool id="fastaselect_1" name="fastaselectclust"> | 2 <tool id="fastaselect_1" name="fastaselectclust"> |
| 3 <description>Get Fasta file of cluster centres from DNAclust output</description> | 3 <description>Get Fasta file of cluster centres from DNAclust output</description> |
| 4 <command>cat $inputClusterFile | fastaselect -c -f $inputFastaFile > $outputfile </command> | 4 <command interpreter="bash">fastaselect.sh $inputFile $inputClusterFile $outputfile</command> |
| 5 <inputs> | 5 <inputs> |
| 6 <param format="fasta" name="inputFastaFile" type="data" label="Fasta input file"/> | 6 <param format="fasta" name="inputFastaFile" type="data" label="Fasta input file"/> |
| 7 <param format="tabular" name="inputClusterFile" type="data" label=" Cluster input file from DNAclust"/> | 7 <param format="text" name="inputClusterFile" type="data" label=" Cluster input file from DNAclust"/> |
| 8 | 8 |
| 9 | 9 |
| 10 </inputs> | 10 </inputs> |
| 11 <outputs> | 11 <outputs> |
| 12 | 12 |