comparison fastaselect.xml @ 0:84be1fe7e34a draft

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0:84be1fe7e34a

<?xml version="1.0"?>
<tool id="fastaselect_1" name="fastaselectclust">
  <description>Get Fasta file of cluster centres from DNAclust output</description>
  <command>cat inputClusterFile | fastaselect  -c  -f  $inputFastaFile > $outputfile </command>
  <inputs>
    <param format="fasta" name="inputFastaFile" type="data" label="Fasta input file"/>
    <param format="tabular" name="inputClusterFile" type="data" label=" Cluster input file from DNAclust"/>


  </inputs>
  <outputs>

     <data format="fasta" name="outputfile" />
  </outputs>

<help>

This tool returns a fasta file containing a subset of sequences from an input mult-fasta file and a list of identifiers.

It was developed as part of the DNACLUST package http://dnaclust.sourceforge.net/  for use in retrieving cluster centres but is handy for any extraction of a sequence subset from Galaxy tabular output

</help>
</tool>