Mercurial > repos > john-mccallum > dnaclust

diff count_cluster_size.xml @ 0:84be1fe7e34a draft

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author john-mccallum
date Thu, 06 Sep 2012 23:05:22 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/count_cluster_size.xml	Thu Sep 06 23:05:22 2012 -0400
@@ -0,0 +1,18 @@
+<?xml version="1.0"?>
+<tool id="count_clustersize_1" name="count_clustersize">
+  <description>Get cluster size  DNAclust output</description>
+  <command>awk 'OFS="\t" {print$1, NF}' $inputClusterFile  > $outputfile </command>
+  <inputs>
+
+    <param format="tabular" name="inputClusterFile" type="data" label=" Cluster input file from DNAclust"/>
+  </inputs>
+  <outputs>
+     <data format="tabular" name="outputfile" />
+  </outputs>
+
+<help>
+Returns the number of members in a  cluster by counting columns from DNA clust output 
+
+</help>
+</tool>
+