Mercurial > repos > john-mccallum > dnaclust

changeset 3:17a8f8670dc9 draft

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Uploaded new fastaselect wrapper
author john-mccallum
date Wed, 26 Jun 2013 22:41:45 -0400
parents 13656c2d7c73
children 37acb97e423f
files fastaselect.xml
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/fastaselect.xml	Wed Jun 26 22:41:02 2013 -0400
+++ b/fastaselect.xml	Wed Jun 26 22:41:45 2013 -0400
@@ -1,10 +1,10 @@
 <?xml version="1.0"?>
 <tool id="fastaselect_1" name="fastaselectclust">
   <description>Get Fasta file of cluster centres from DNAclust output</description>
-  <command>cat $inputClusterFile | fastaselect  -c  -f  $inputFastaFile > $outputfile </command>
+ <command interpreter="bash">fastaselect.sh $inputFile $inputClusterFile  $outputfile</command>
   <inputs>
     <param format="fasta" name="inputFastaFile" type="data" label="Fasta input file"/>
-    <param format="tabular" name="inputClusterFile" type="data" label=" Cluster input file from DNAclust"/>
+    <param format="text" name="inputClusterFile" type="data" label=" Cluster input file from DNAclust"/>
 
 
   </inputs>