Mercurial > repos > john-mccallum > dnaclust
changeset 5:0b4f4d41b47b draft default tip
Uploaded
| author | john-mccallum |
|---|---|
| date | Wed, 26 Jun 2013 22:46:01 -0400 |
| parents | 37acb97e423f |
| children | |
| files | fastaselect.xml |
| diffstat | 1 files changed, 24 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/fastaselect.xml Wed Jun 26 22:46:01 2013 -0400 @@ -0,0 +1,24 @@ +<?xml version="1.0"?> +<tool id="fastaselect_1" name="fastaselectclust"> + <description>Get Fasta file of cluster centres from DNAclust output</description> + <command interpreter="bash">fastaselect.sh $inputFastaFile $inputClusterFile $outputfile</command> + <inputs> + <param format="fasta" name="inputFastaFile" type="data" label="Fasta input file"/> + <param format="text" name="inputClusterFile" type="data" label=" Cluster input file from DNAclust"/> + + + </inputs> + <outputs> + + <data format="fasta" name="outputfile" /> + </outputs> + +<help> + +This tool returns a fasta file containing a subset of sequences from an input mult-fasta file and a list of identifiers. + +It was developed as part of the DNACLUST package http://dnaclust.sourceforge.net/ for use in retrieving cluster centres but is handy for any extraction of a sequence subset from Galaxy tabular output + +</help> +</tool> +