Mercurial > repos > john-mccallum > pcr_markers
comparison design_primers.xml @ 1:a0689dc29b7f draft
Updated vcf to gff conversion tool
| author | john-mccallum |
|---|---|
| date | Tue, 31 Jul 2012 00:33:11 -0400 |
| parents | 21053f7f9ed1 |
| children | b321e0517be3 |
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| 0:21053f7f9ed1 | 1:a0689dc29b7f |
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| 3 <description>Design PCR Primers to Features</description> | 3 <description>Design PCR Primers to Features</description> |
| 4 <command interpreter="python">design_primers.py $inputfastaFile $inputSNPfile $inputTargetfile $min_size $max_size > $primer_outputfile </command> | 4 <command interpreter="python">design_primers.py $inputfastaFile $inputSNPfile $inputTargetfile $min_size $max_size > $primer_outputfile </command> |
| 5 <inputs> | 5 <inputs> |
| 6 <param format="fasta" name="inputfastaFile" type="data" label="Multifasta Source file" /> | 6 <param format="fasta" name="inputfastaFile" type="data" label="Multifasta Source file" /> |
| 7 <param format="gff3" name="inputSNPfile" type="data" label="annotation file(Gff3)" /> | 7 <param format="gff3" name="inputSNPfile" type="data" label="annotation file(Gff3)" /> |
| 8 <param format="txt" name="inputTargetfile" type="data" optional="false" label="Target file" help="Format:Sequence id:source:type:start, such as 1174806:gsMapper:SNP:292" ></param> | 8 <param format="txt" name="inputTargetfile" type="data" optional="false" label="Target file" help="IN FORMAT Sequence id:source:type:start e.g. 1174806:gsMapper:SNP:292" ></param> |
| 9 <param name="min_size" size="20" type="text" value="75" label="Minimum Product Size Range" /> | 9 <param name="min_size" size="20" type="text" value="75" label="Minimum Product Size Range" /> |
| 10 <param name="max_size" size="20" type="text" value="100" label="Maximum Product Size Range" /> | 10 <param name="max_size" size="20" type="text" value="100" label="Maximum Product Size Range" /> |
| 11 </inputs> | 11 </inputs> |
| 12 <outputs> | 12 <outputs> |
| 13 <data format="tabular" name="primer_outputfile" /> | 13 <data format="tabular" name="primer_outputfile" /> |