diff CAPS2gff.xml @ 0:21053f7f9ed1 draft

First upload of PCR Marker tools

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/CAPS2gff.xml	Thu Jun 14 19:29:26 2012 -0400
@@ -0,0 +1,32 @@
+<?xml version="1.0"?>
+<tool id="CAPS2gff" name="CAPS Output to GFF3">
+  <description>convert output of CAPS detection to gvf/gff3</description>
+  <command interpreter="bash">CAPS2gff.sh $inputFile  $outputfile</command>
+  <inputs>
+    <param format="tabular" name="inputFile" type="data" label="Input CAPS File" help="tabular CAPS from find_CAPs tool" />
+  </inputs>
+  <outputs>
+<data format="gff3" name="outputfile" />
+
+  </outputs>
+<help>
+This tool provides a simple conversion from CAPS 3 column output to GFF3
+
+-----------------------
+
+*If you use this tool please cite:*
+
+A Toolkit For Bulk PCR-Based Marker Design From Next-Generation Sequence Data: 
+Application For  Development Of A Framework Linkage Map In Bulb Onion (*Allium cepa* L.)
+(2012)
+
+Samantha Baldwin, Roopashree Revanna, Susan Thomson, Meeghan Pither-Joyce, Kathryn Wright, 
+Ross Crowhurst, Mark Fiers, Leshi Chen, Richard MacKnight, John A. McCallum
+
+
+
+
+
+</help>
+</tool>
+