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view test-data/mpileup_vcf_to_gff_output.gff @ 5:b321e0517be3 draft

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author ben-warren
date Thu, 22 May 2014 20:30:19 -0400
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#gff-version 3
Chr1	SAMTOOLS	SNP	14086	14086	31.5	.	.	ID=Chr1:SNP:14086;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14087	14087	26	.	.	ID=Chr1:SNP:14087;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14088	14088	31.5	.	.	ID=Chr1:SNP:14088;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14089	14089	31.5	.	.	ID=Chr1:SNP:14089;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14090	14090	31.5	.	.	ID=Chr1:SNP:14090;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14091	14091	26	.	.	ID=Chr1:SNP:14091;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14092	14092	26	.	.	ID=Chr1:SNP:14092;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14093	14093	31.5	.	.	ID=Chr1:SNP:14093;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14094	14094	31.5	.	.	ID=Chr1:SNP:14094;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14095	14095	31.5	.	.	ID=Chr1:SNP:14095;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14096	14096	31.5	.	.	ID=Chr1:SNP:14096;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14097	14097	31.5	.	.	ID=Chr1:SNP:14097;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14098	14098	31.5	.	.	ID=Chr1:SNP:14098;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14099	14099	31.5	.	.	ID=Chr1:SNP:14099;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14100	14100	31.5	.	.	ID=Chr1:SNP:14100;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14101	14101	31.5	.	.	ID=Chr1:SNP:14101;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14102	14102	31.5	.	.	ID=Chr1:SNP:14102;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14103	14103	26	.	.	ID=Chr1:SNP:14103;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14104	14104	31.5	.	.	ID=Chr1:SNP:14104;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14105	14105	26	.	.	ID=Chr1:SNP:14105;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14106	14106	31.5	.	.	ID=Chr1:SNP:14106;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14107	14107	31.5	.	.	ID=Chr1:SNP:14107;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14108	14108	31.5	.	.	ID=Chr1:SNP:14108;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14109	14109	31.5	.	.	ID=Chr1:SNP:14109;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14110	14110	31.5	.	.	ID=Chr1:SNP:14110;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14111	14111	31.5	.	.	ID=Chr1:SNP:14111;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14112	14112	31.5	.	.	ID=Chr1:SNP:14112;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14113	14113	31.5	.	.	ID=Chr1:SNP:14113;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14114	14114	31.5	.	.	ID=Chr1:SNP:14114;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14115	14115	31.5	.	.	ID=Chr1:SNP:14115;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14116	14116	31.5	.	.	ID=Chr1:SNP:14116;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14117	14117	31.5	.	.	ID=Chr1:SNP:14117;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14118	14118	31.5	.	.	ID=Chr1:SNP:14118;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14119	14119	26	.	.	ID=Chr1:SNP:14119;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14120	14120	31.5	.	.	ID=Chr1:SNP:14120;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14121	14121	31.5	.	.	ID=Chr1:SNP:14121;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14122	14122	31.5	.	.	ID=Chr1:SNP:14122;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14123	14123	31.5	.	.	ID=Chr1:SNP:14123;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14124	14124	31.5	.	.	ID=Chr1:SNP:14124;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14125	14125	31.5	.	.	ID=Chr1:SNP:14125;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14126	14126	26	.	.	ID=Chr1:SNP:14126;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14127	14127	31.5	.	.	ID=Chr1:SNP:14127;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14128	14128	31.5	.	.	ID=Chr1:SNP:14128;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14129	14129	31.5	.	.	ID=Chr1:SNP:14129;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14130	14130	31.5	.	.	ID=Chr1:SNP:14130;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14131	14131	26	.	.	ID=Chr1:SNP:14131;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14132	14132	31.5	.	.	ID=Chr1:SNP:14132;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14133	14133	26	.	.	ID=Chr1:SNP:14133;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14134	14134	31.5	.	.	ID=Chr1:SNP:14134;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14135	14135	31.5	.	.	ID=Chr1:SNP:14135;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14136	14136	26	.	.	ID=Chr1:SNP:14136;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14137	14137	31.5	.	.	ID=Chr1:SNP:14137;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14138	14138	31.5	.	.	ID=Chr1:SNP:14138;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14139	14139	31.5	.	.	ID=Chr1:SNP:14139;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14140	14140	31.5	.	.	ID=Chr1:SNP:14140;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14141	14141	26	.	.	ID=Chr1:SNP:14141;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14142	14142	31.5	.	.	ID=Chr1:SNP:14142;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14143	14143	26	.	.	ID=Chr1:SNP:14143;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14144	14144	31.5	.	.	ID=Chr1:SNP:14144;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14145	14145	31.5	.	.	ID=Chr1:SNP:14145;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14146	14146	31.5	.	.	ID=Chr1:SNP:14146;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14147	14147	31.5	.	.	ID=Chr1:SNP:14147;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14148	14148	31.5	.	.	ID=Chr1:SNP:14148;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14149	14149	31.5	.	.	ID=Chr1:SNP:14149;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14150	14150	31.5	.	.	ID=Chr1:SNP:14150;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14151	14151	31.5	.	.	ID=Chr1:SNP:14151;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14152	14152	31.5	.	.	ID=Chr1:SNP:14152;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14153	14153	31.5	.	.	ID=Chr1:SNP:14153;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14154	14154	31.5	.	.	ID=Chr1:SNP:14154;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14155	14155	31.5	.	.	ID=Chr1:SNP:14155;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14156	14156	31.5	.	.	ID=Chr1:SNP:14156;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14157	14157	31.5	.	.	ID=Chr1:SNP:14157;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14158	14158	31.5	.	.	ID=Chr1:SNP:14158;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14159	14159	26	.	.	ID=Chr1:SNP:14159;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14160	14160	31.5	.	.	ID=Chr1:SNP:14160;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14161	14161	31.5	.	.	ID=Chr1:SNP:14161;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14162	14162	31.5	.	.	ID=Chr1:SNP:14162;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14163	14163	31.5	.	.	ID=Chr1:SNP:14163;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14164	14164	31.5	.	.	ID=Chr1:SNP:14164;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14165	14165	31.5	.	.	ID=Chr1:SNP:14165;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14166	14166	31.5	.	.	ID=Chr1:SNP:14166;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14167	14167	26	.	.	ID=Chr1:SNP:14167;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14168	14168	31.5	.	.	ID=Chr1:SNP:14168;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14169	14169	31.5	.	.	ID=Chr1:SNP:14169;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14170	14170	31.5	.	.	ID=Chr1:SNP:14170;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14171	14171	31.5	.	.	ID=Chr1:SNP:14171;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14172	14172	31.5	.	.	ID=Chr1:SNP:14172;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14173	14173	31.5	.	.	ID=Chr1:SNP:14173;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14174	14174	31.5	.	.	ID=Chr1:SNP:14174;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14175	14175	31.5	.	.	ID=Chr1:SNP:14175;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14176	14176	31.5	.	.	ID=Chr1:SNP:14176;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14177	14177	31.5	.	.	ID=Chr1:SNP:14177;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14178	14178	31.5	.	.	ID=Chr1:SNP:14178;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14179	14179	31.5	.	.	ID=Chr1:SNP:14179;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14180	14180	31.5	.	.	ID=Chr1:SNP:14180;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14181	14181	31.5	.	.	ID=Chr1:SNP:14181;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14182	14182	26	.	.	ID=Chr1:SNP:14182;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14183	14183	31.5	.	.	ID=Chr1:SNP:14183;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14184	14184	31.5	.	.	ID=Chr1:SNP:14184;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14185	14185	31.5	.	.	ID=Chr1:SNP:14185;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14230	14230	26	.	.	ID=Chr1:SNP:14230;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14231	14231	31.5	.	.	ID=Chr1:SNP:14231;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14232	14232	31.5	.	.	ID=Chr1:SNP:14232;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14233	14233	31.5	.	.	ID=Chr1:SNP:14233;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14234	14234	31.5	.	.	ID=Chr1:SNP:14234;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14235	14235	31.5	.	.	ID=Chr1:SNP:14235;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14236	14236	31.5	.	.	ID=Chr1:SNP:14236;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14237	14237	31.5	.	.	ID=Chr1:SNP:14237;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14238	14238	31.5	.	.	ID=Chr1:SNP:14238;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14239	14239	31.5	.	.	ID=Chr1:SNP:14239;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14240	14240	26	.	.	ID=Chr1:SNP:14240;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14241	14241	31.5	.	.	ID=Chr1:SNP:14241;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14242	14242	31.5	.	.	ID=Chr1:SNP:14242;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14243	14243	31.5	.	.	ID=Chr1:SNP:14243;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14244	14244	31.5	.	.	ID=Chr1:SNP:14244;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14245	14245	31.5	.	.	ID=Chr1:SNP:14245;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14246	14246	31.5	.	.	ID=Chr1:SNP:14246;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14247	14247	26	.	.	ID=Chr1:SNP:14247;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14248	14248	31.5	.	.	ID=Chr1:SNP:14248;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14249	14249	31.5	.	.	ID=Chr1:SNP:14249;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14250	14250	31.5	.	.	ID=Chr1:SNP:14250;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14251	14251	31.5	.	.	ID=Chr1:SNP:14251;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14252	14252	31.5	.	.	ID=Chr1:SNP:14252;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14253	14253	31.5	.	.	ID=Chr1:SNP:14253;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14254	14254	31.5	.	.	ID=Chr1:SNP:14254;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14255	14255	31.5	.	.	ID=Chr1:SNP:14255;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14256	14256	26	.	.	ID=Chr1:SNP:14256;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14257	14257	31.5	.	.	ID=Chr1:SNP:14257;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14258	14258	31.5	.	.	ID=Chr1:SNP:14258;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14259	14259	31.5	.	.	ID=Chr1:SNP:14259;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14260	14260	31.5	.	.	ID=Chr1:SNP:14260;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14261	14261	31.5	.	.	ID=Chr1:SNP:14261;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14262	14262	26	.	.	ID=Chr1:SNP:14262;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14263	14263	26	.	.	ID=Chr1:SNP:14263;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14264	14264	31.5	.	.	ID=Chr1:SNP:14264;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14265	14265	31.5	.	.	ID=Chr1:SNP:14265;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14266	14266	31.5	.	.	ID=Chr1:SNP:14266;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14267	14267	31.5	.	.	ID=Chr1:SNP:14267;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14268	14268	31.5	.	.	ID=Chr1:SNP:14268;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14269	14269	31.5	.	.	ID=Chr1:SNP:14269;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14270	14270	31.5	.	.	ID=Chr1:SNP:14270;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14271	14271	31.5	.	.	ID=Chr1:SNP:14271;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14272	14272	31.5	.	.	ID=Chr1:SNP:14272;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14273	14273	31.5	.	.	ID=Chr1:SNP:14273;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14274	14274	31.5	.	.	ID=Chr1:SNP:14274;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14275	14275	31.5	.	.	ID=Chr1:SNP:14275;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14276	14276	31.5	.	.	ID=Chr1:SNP:14276;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14277	14277	31.5	.	.	ID=Chr1:SNP:14277;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14278	14278	31.5	.	.	ID=Chr1:SNP:14278;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14279	14279	31.5	.	.	ID=Chr1:SNP:14279;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14280	14280	31.5	.	.	ID=Chr1:SNP:14280;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14281	14281	31.5	.	.	ID=Chr1:SNP:14281;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14282	14282	31.5	.	.	ID=Chr1:SNP:14282;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14283	14283	31.5	.	.	ID=Chr1:SNP:14283;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14284	14284	31.5	.	.	ID=Chr1:SNP:14284;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14285	14285	31.5	.	.	ID=Chr1:SNP:14285;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14286	14286	31.5	.	.	ID=Chr1:SNP:14286;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14287	14287	31.5	.	.	ID=Chr1:SNP:14287;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14288	14288	31.5	.	.	ID=Chr1:SNP:14288;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14289	14289	31.5	.	.	ID=Chr1:SNP:14289;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14290	14290	31.5	.	.	ID=Chr1:SNP:14290;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14291	14291	31.5	.	.	ID=Chr1:SNP:14291;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14292	14292	26	.	.	ID=Chr1:SNP:14292;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14293	14293	31.5	.	.	ID=Chr1:SNP:14293;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14294	14294	31.5	.	.	ID=Chr1:SNP:14294;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14295	14295	26	.	.	ID=Chr1:SNP:14295;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14296	14296	31.5	.	.	ID=Chr1:SNP:14296;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14297	14297	31.5	.	.	ID=Chr1:SNP:14297;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14298	14298	31.5	.	.	ID=Chr1:SNP:14298;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14299	14299	31.5	.	.	ID=Chr1:SNP:14299;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14300	14300	31.5	.	.	ID=Chr1:SNP:14300;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14301	14301	31.5	.	.	ID=Chr1:SNP:14301;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14302	14302	31.5	.	.	ID=Chr1:SNP:14302;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14303	14303	31.5	.	.	ID=Chr1:SNP:14303;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14304	14304	31.5	.	.	ID=Chr1:SNP:14304;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14305	14305	31.5	.	.	ID=Chr1:SNP:14305;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14306	14306	26	.	.	ID=Chr1:SNP:14306;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14307	14307	26	.	.	ID=Chr1:SNP:14307;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14308	14308	31.5	.	.	ID=Chr1:SNP:14308;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14309	14309	31.5	.	.	ID=Chr1:SNP:14309;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14310	14310	31.5	.	.	ID=Chr1:SNP:14310;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14311	14311	31.5	.	.	ID=Chr1:SNP:14311;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14312	14312	26	.	.	ID=Chr1:SNP:14312;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14313	14313	26	.	.	ID=Chr1:SNP:14313;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14314	14314	31.5	.	.	ID=Chr1:SNP:14314;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14315	14315	31.5	.	.	ID=Chr1:SNP:14315;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14316	14316	31.5	.	.	ID=Chr1:SNP:14316;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14317	14317	31.5	.	.	ID=Chr1:SNP:14317;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14318	14318	31.5	.	.	ID=Chr1:SNP:14318;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14319	14319	31.5	.	.	ID=Chr1:SNP:14319;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14320	14320	31.5	.	.	ID=Chr1:SNP:14320;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	INDEL	14320	14322	33.5	.	.	ID=Chr1:INDEL:14320;Variant_seq=.;Reference_seq=TC;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14321	14321	31.5	.	.	ID=Chr1:SNP:14321;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14322	14322	26	.	.	ID=Chr1:SNP:14322;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14323	14323	31.5	.	.	ID=Chr1:SNP:14323;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14324	14324	26	.	.	ID=Chr1:SNP:14324;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14325	14325	31.5	.	.	ID=Chr1:SNP:14325;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14326	14326	31.5	.	.	ID=Chr1:SNP:14326;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14327	14327	26	.	.	ID=Chr1:SNP:14327;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	14328	14328	31.5	.	.	ID=Chr1:SNP:14328;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120479	120479	31.5	.	.	ID=Chr1:SNP:120479;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120480	120480	31.5	.	.	ID=Chr1:SNP:120480;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120481	120481	31.5	.	.	ID=Chr1:SNP:120481;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120482	120482	31.5	.	.	ID=Chr1:SNP:120482;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120483	120483	31.5	.	.	ID=Chr1:SNP:120483;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120484	120484	31.5	.	.	ID=Chr1:SNP:120484;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120485	120485	31.5	.	.	ID=Chr1:SNP:120485;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120486	120486	31.5	.	.	ID=Chr1:SNP:120486;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120487	120487	31.5	.	.	ID=Chr1:SNP:120487;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120488	120488	31.5	.	.	ID=Chr1:SNP:120488;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120489	120489	31.5	.	.	ID=Chr1:SNP:120489;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120490	120490	31.5	.	.	ID=Chr1:SNP:120490;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120491	120491	31.5	.	.	ID=Chr1:SNP:120491;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120492	120492	31.5	.	.	ID=Chr1:SNP:120492;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120493	120493	31.5	.	.	ID=Chr1:SNP:120493;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120494	120494	31.5	.	.	ID=Chr1:SNP:120494;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120495	120495	31.5	.	.	ID=Chr1:SNP:120495;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120496	120496	31.5	.	.	ID=Chr1:SNP:120496;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120497	120497	31.5	.	.	ID=Chr1:SNP:120497;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120498	120498	26	.	.	ID=Chr1:SNP:120498;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120499	120499	31.5	.	.	ID=Chr1:SNP:120499;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120500	120500	31.5	.	.	ID=Chr1:SNP:120500;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120501	120501	31.5	.	.	ID=Chr1:SNP:120501;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120502	120502	31.5	.	.	ID=Chr1:SNP:120502;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120503	120503	31.5	.	.	ID=Chr1:SNP:120503;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120504	120504	31.5	.	.	ID=Chr1:SNP:120504;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120505	120505	31.5	.	.	ID=Chr1:SNP:120505;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120506	120506	31.5	.	.	ID=Chr1:SNP:120506;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120507	120507	31.5	.	.	ID=Chr1:SNP:120507;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120508	120508	26	.	.	ID=Chr1:SNP:120508;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120509	120509	31.5	.	.	ID=Chr1:SNP:120509;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120510	120510	31.5	.	.	ID=Chr1:SNP:120510;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120511	120511	31.5	.	.	ID=Chr1:SNP:120511;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120512	120512	31.5	.	.	ID=Chr1:SNP:120512;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120513	120513	31.5	.	.	ID=Chr1:SNP:120513;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120514	120514	31.5	.	.	ID=Chr1:SNP:120514;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120515	120515	26	.	.	ID=Chr1:SNP:120515;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120516	120516	31.5	.	.	ID=Chr1:SNP:120516;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120517	120517	31.5	.	.	ID=Chr1:SNP:120517;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120518	120518	26	.	.	ID=Chr1:SNP:120518;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120519	120519	31.5	.	.	ID=Chr1:SNP:120519;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120520	120520	31.5	.	.	ID=Chr1:SNP:120520;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120521	120521	31.5	.	.	ID=Chr1:SNP:120521;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120522	120522	31.5	.	.	ID=Chr1:SNP:120522;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120523	120523	31.5	.	.	ID=Chr1:SNP:120523;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120524	120524	31.5	.	.	ID=Chr1:SNP:120524;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120525	120525	31.5	.	.	ID=Chr1:SNP:120525;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120526	120526	31.5	.	.	ID=Chr1:SNP:120526;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120527	120527	31.5	.	.	ID=Chr1:SNP:120527;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120528	120528	31.5	.	.	ID=Chr1:SNP:120528;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120529	120529	31.5	.	.	ID=Chr1:SNP:120529;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120530	120530	31.5	.	.	ID=Chr1:SNP:120530;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120531	120531	31.5	.	.	ID=Chr1:SNP:120531;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120532	120532	31.5	.	.	ID=Chr1:SNP:120532;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120533	120533	31.5	.	.	ID=Chr1:SNP:120533;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120534	120534	31.5	.	.	ID=Chr1:SNP:120534;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120535	120535	31.5	.	.	ID=Chr1:SNP:120535;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120536	120536	31.5	.	.	ID=Chr1:SNP:120536;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120537	120537	31.5	.	.	ID=Chr1:SNP:120537;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120538	120538	31.5	.	.	ID=Chr1:SNP:120538;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120539	120539	31.5	.	.	ID=Chr1:SNP:120539;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120540	120540	31.5	.	.	ID=Chr1:SNP:120540;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120541	120541	31.5	.	.	ID=Chr1:SNP:120541;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120542	120542	31.5	.	.	ID=Chr1:SNP:120542;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120543	120543	31.5	.	.	ID=Chr1:SNP:120543;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120544	120544	31.5	.	.	ID=Chr1:SNP:120544;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120545	120545	31.5	.	.	ID=Chr1:SNP:120545;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120546	120546	31.5	.	.	ID=Chr1:SNP:120546;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120547	120547	31.5	.	.	ID=Chr1:SNP:120547;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120548	120548	31.5	.	.	ID=Chr1:SNP:120548;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120549	120549	31.5	.	.	ID=Chr1:SNP:120549;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120550	120550	31.5	.	.	ID=Chr1:SNP:120550;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120551	120551	31.5	.	.	ID=Chr1:SNP:120551;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120552	120552	31.5	.	.	ID=Chr1:SNP:120552;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120553	120553	26	.	.	ID=Chr1:SNP:120553;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120554	120554	31.5	.	.	ID=Chr1:SNP:120554;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120555	120555	31.5	.	.	ID=Chr1:SNP:120555;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120556	120556	31.5	.	.	ID=Chr1:SNP:120556;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120557	120557	31.5	.	.	ID=Chr1:SNP:120557;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120558	120558	31.5	.	.	ID=Chr1:SNP:120558;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120559	120559	31.5	.	.	ID=Chr1:SNP:120559;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120560	120560	31.5	.	.	ID=Chr1:SNP:120560;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120561	120561	26	.	.	ID=Chr1:SNP:120561;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120562	120562	31.5	.	.	ID=Chr1:SNP:120562;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120563	120563	31.5	.	.	ID=Chr1:SNP:120563;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120564	120564	31.5	.	.	ID=Chr1:SNP:120564;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120565	120565	31.5	.	.	ID=Chr1:SNP:120565;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120566	120566	31.5	.	.	ID=Chr1:SNP:120566;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120567	120567	31.5	.	.	ID=Chr1:SNP:120567;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120568	120568	31.5	.	.	ID=Chr1:SNP:120568;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120569	120569	31.5	.	.	ID=Chr1:SNP:120569;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120570	120570	31.5	.	.	ID=Chr1:SNP:120570;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120571	120571	26	.	.	ID=Chr1:SNP:120571;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120572	120572	31.5	.	.	ID=Chr1:SNP:120572;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120573	120573	26	.	.	ID=Chr1:SNP:120573;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120574	120574	31.5	.	.	ID=Chr1:SNP:120574;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120575	120575	26	.	.	ID=Chr1:SNP:120575;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120576	120576	31.5	.	.	ID=Chr1:SNP:120576;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120577	120577	26	.	.	ID=Chr1:SNP:120577;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120578	120578	26	.	.	ID=Chr1:SNP:120578;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120594	120594	31.5	.	.	ID=Chr1:SNP:120594;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120595	120595	31.5	.	.	ID=Chr1:SNP:120595;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120596	120596	31.5	.	.	ID=Chr1:SNP:120596;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120597	120597	31.5	.	.	ID=Chr1:SNP:120597;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120598	120598	31.5	.	.	ID=Chr1:SNP:120598;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120599	120599	31.5	.	.	ID=Chr1:SNP:120599;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120600	120600	31.5	.	.	ID=Chr1:SNP:120600;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120601	120601	31.5	.	.	ID=Chr1:SNP:120601;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120602	120602	31.5	.	.	ID=Chr1:SNP:120602;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120603	120603	31.5	.	.	ID=Chr1:SNP:120603;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120604	120604	31.5	.	.	ID=Chr1:SNP:120604;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120605	120605	31.5	.	.	ID=Chr1:SNP:120605;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120606	120606	31.5	.	.	ID=Chr1:SNP:120606;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120607	120607	26	.	.	ID=Chr1:SNP:120607;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120608	120608	31.5	.	.	ID=Chr1:SNP:120608;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120609	120609	31.5	.	.	ID=Chr1:SNP:120609;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120610	120610	31.5	.	.	ID=Chr1:SNP:120610;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120611	120611	31.5	.	.	ID=Chr1:SNP:120611;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120612	120612	31.5	.	.	ID=Chr1:SNP:120612;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120613	120613	31.5	.	.	ID=Chr1:SNP:120613;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120614	120614	31.5	.	.	ID=Chr1:SNP:120614;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120615	120615	31.5	.	.	ID=Chr1:SNP:120615;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120616	120616	31.5	.	.	ID=Chr1:SNP:120616;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120617	120617	26	.	.	ID=Chr1:SNP:120617;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120618	120618	31.5	.	.	ID=Chr1:SNP:120618;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120619	120619	31.5	.	.	ID=Chr1:SNP:120619;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120620	120620	31.5	.	.	ID=Chr1:SNP:120620;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120621	120621	31.5	.	.	ID=Chr1:SNP:120621;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120622	120622	31.5	.	.	ID=Chr1:SNP:120622;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120623	120623	31.5	.	.	ID=Chr1:SNP:120623;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120624	120624	31.5	.	.	ID=Chr1:SNP:120624;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120625	120625	31.5	.	.	ID=Chr1:SNP:120625;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120626	120626	31.5	.	.	ID=Chr1:SNP:120626;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120627	120627	31.5	.	.	ID=Chr1:SNP:120627;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120628	120628	31.5	.	.	ID=Chr1:SNP:120628;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120629	120629	31.5	.	.	ID=Chr1:SNP:120629;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120630	120630	31.5	.	.	ID=Chr1:SNP:120630;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120631	120631	31.5	.	.	ID=Chr1:SNP:120631;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120632	120632	26	.	.	ID=Chr1:SNP:120632;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120633	120633	31.5	.	.	ID=Chr1:SNP:120633;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120634	120634	26	.	.	ID=Chr1:SNP:120634;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120635	120635	31.5	.	.	ID=Chr1:SNP:120635;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120636	120636	31.5	.	.	ID=Chr1:SNP:120636;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120637	120637	31.5	.	.	ID=Chr1:SNP:120637;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120638	120638	31.5	.	.	ID=Chr1:SNP:120638;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120639	120639	31.5	.	.	ID=Chr1:SNP:120639;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120640	120640	31.5	.	.	ID=Chr1:SNP:120640;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120641	120641	31.5	.	.	ID=Chr1:SNP:120641;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120642	120642	31.5	.	.	ID=Chr1:SNP:120642;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120643	120643	31.5	.	.	ID=Chr1:SNP:120643;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120644	120644	26	.	.	ID=Chr1:SNP:120644;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120645	120645	31.5	.	.	ID=Chr1:SNP:120645;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120646	120646	26	.	.	ID=Chr1:SNP:120646;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120647	120647	31.5	.	.	ID=Chr1:SNP:120647;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120648	120648	31.5	.	.	ID=Chr1:SNP:120648;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120649	120649	31.5	.	.	ID=Chr1:SNP:120649;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120650	120650	31.5	.	.	ID=Chr1:SNP:120650;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120651	120651	31.5	.	.	ID=Chr1:SNP:120651;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120652	120652	31.5	.	.	ID=Chr1:SNP:120652;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120653	120653	31.5	.	.	ID=Chr1:SNP:120653;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120654	120654	31.5	.	.	ID=Chr1:SNP:120654;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120655	120655	31.5	.	.	ID=Chr1:SNP:120655;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120656	120656	31.5	.	.	ID=Chr1:SNP:120656;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120657	120657	31.5	.	.	ID=Chr1:SNP:120657;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120658	120658	31.5	.	.	ID=Chr1:SNP:120658;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120659	120659	31.5	.	.	ID=Chr1:SNP:120659;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120660	120660	31.5	.	.	ID=Chr1:SNP:120660;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120661	120661	31.5	.	.	ID=Chr1:SNP:120661;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120662	120662	31.5	.	.	ID=Chr1:SNP:120662;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120663	120663	26	.	.	ID=Chr1:SNP:120663;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120664	120664	26	.	.	ID=Chr1:SNP:120664;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120665	120665	31.5	.	.	ID=Chr1:SNP:120665;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120666	120666	31.5	.	.	ID=Chr1:SNP:120666;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120667	120667	31.5	.	.	ID=Chr1:SNP:120667;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120668	120668	31.5	.	.	ID=Chr1:SNP:120668;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120669	120669	31.5	.	.	ID=Chr1:SNP:120669;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120670	120670	31.5	.	.	ID=Chr1:SNP:120670;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120671	120671	31.5	.	.	ID=Chr1:SNP:120671;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120672	120672	31.5	.	.	ID=Chr1:SNP:120672;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120673	120673	31.5	.	.	ID=Chr1:SNP:120673;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120674	120674	31.5	.	.	ID=Chr1:SNP:120674;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120675	120675	26	.	.	ID=Chr1:SNP:120675;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120676	120676	26	.	.	ID=Chr1:SNP:120676;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120677	120677	31.5	.	.	ID=Chr1:SNP:120677;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120678	120678	31.5	.	.	ID=Chr1:SNP:120678;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120679	120679	31.5	.	.	ID=Chr1:SNP:120679;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120680	120680	31.5	.	.	ID=Chr1:SNP:120680;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120681	120681	31.5	.	.	ID=Chr1:SNP:120681;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120682	120682	26	.	.	ID=Chr1:SNP:120682;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120683	120683	26	.	.	ID=Chr1:SNP:120683;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120684	120684	31.5	.	.	ID=Chr1:SNP:120684;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120685	120685	26	.	.	ID=Chr1:SNP:120685;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120686	120686	26	.	.	ID=Chr1:SNP:120686;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120687	120687	31.5	.	.	ID=Chr1:SNP:120687;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120688	120688	26	.	.	ID=Chr1:SNP:120688;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120689	120689	31.5	.	.	ID=Chr1:SNP:120689;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120690	120690	26	.	.	ID=Chr1:SNP:120690;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120691	120691	31.5	.	.	ID=Chr1:SNP:120691;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120692	120692	26	.	.	ID=Chr1:SNP:120692;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	120693	120693	31.5	.	.	ID=Chr1:SNP:120693;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	1072445	1072445	26	.	.	ID=Chr1:SNP:1072445;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	1072446	1072446	31.5	.	.	ID=Chr1:SNP:1072446;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	1072447	1072447	31.5	.	.	ID=Chr1:SNP:1072447;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	1072448	1072448	31.5	.	.	ID=Chr1:SNP:1072448;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	1072449	1072449	26	.	.	ID=Chr1:SNP:1072449;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	1072450	1072450	31.5	.	.	ID=Chr1:SNP:1072450;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	1072451	1072451	26	.	.	ID=Chr1:SNP:1072451;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	1072452	1072452	31.5	.	.	ID=Chr1:SNP:1072452;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	1072453	1072453	26	.	.	ID=Chr1:SNP:1072453;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	1072454	1072454	26	.	.	ID=Chr1:SNP:1072454;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	1072455	1072455	26	.	.	ID=Chr1:SNP:1072455;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	1072456	1072456	31.5	.	.	ID=Chr1:SNP:1072456;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	1072457	1072457	31.5	.	.	ID=Chr1:SNP:1072457;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	1072458	1072458	31.5	.	.	ID=Chr1:SNP:1072458;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	1072459	1072459	26	.	.	ID=Chr1:SNP:1072459;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	1072460	1072460	31.5	.	.	ID=Chr1:SNP:1072460;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	1072461	1072461	31.5	.	.	ID=Chr1:SNP:1072461;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	INDEL	1072461	1072462	33.5	.	.	ID=Chr1:INDEL:1072461;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	1072462	1072462	31.5	.	.	ID=Chr1:SNP:1072462;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	1072463	1072463	31.5	.	.	ID=Chr1:SNP:1072463;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	1072464	1072464	31.5	.	.	ID=Chr1:SNP:1072464;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	1072465	1072465	31.5	.	.	ID=Chr1:SNP:1072465;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	1072466	1072466	31.5	.	.	ID=Chr1:SNP:1072466;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	1072467	1072467	32	.	.	ID=Chr1:SNP:1072467;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	1072468	1072468	32.4	.	.	ID=Chr1:SNP:1072468;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	1072469	1072469	32.4	.	.	ID=Chr1:SNP:1072469;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	1072470	1072470	32.4	.	.	ID=Chr1:SNP:1072470;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	1072471	1072471	32.4	.	.	ID=Chr1:SNP:1072471;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	1072472	1072472	32.4	.	.	ID=Chr1:SNP:1072472;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	1072473	1072473	32.4	.	.	ID=Chr1:SNP:1072473;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	1072474	1072474	32.4	.	.	ID=Chr1:SNP:1072474;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	1072475	1072475	32.4	.	.	ID=Chr1:SNP:1072475;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	1072476	1072476	32.4	.	.	ID=Chr1:SNP:1072476;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	1072477	1072477	32.4	.	.	ID=Chr1:SNP:1072477;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA 
Chr1	SAMTOOLS	SNP	1072478	1072478	32.4	.	.	ID=Chr1:SNP:1072478;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA